Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D05
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    28   0.097
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.7  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 0.097
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 609 QVSSYILQDFGLLVEFASVRLAGL--EVDQLRQRTP 508
           Q  SY  QD GL   +A V LAG   E +Q +Q+ P
Sbjct: 207 QQLSYFTQDIGLAAYYAQVNLAGYIQEQNQQQQQQP 242


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 181  VAHTRNASTHNRPGLLCVHRQ 243
            V H  NAS H+R G   + RQ
Sbjct: 1763 VGHPTNASAHSRSGSQSMPRQ 1783


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 189 HTERIHTQPSRTTMC 233
           H + +HT+PS+  +C
Sbjct: 21  HIQNVHTRPSKEPIC 35


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 301 PLGSPHNDEDASNTIVDGISVY 236
           P G P N+ED+S  IV G S Y
Sbjct: 52  PPGPPPNNEDSSGVIV-GASGY 72


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 690 PAASYRYVLHLQMNVP 643
           PAA  RY   LQ+ VP
Sbjct: 694 PAAEVRYTAKLQVKVP 709


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,237
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)