Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D04
         (533 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q59NL2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_A2X938 Cluster: Putative uncharacterized protein; n=3; ...    32   7.2  

>UniRef50_Q59NL2 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 108

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -3

Query: 156 PFYYILLLAINCNNFTSLI 100
           PFYY LLL IN NN+T+++
Sbjct: 39  PFYYYLLLIINYNNYTTIV 57


>UniRef50_A2X938 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 356

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 345 EIISTGCVKDFPESTEGSCIRRTHRYSPGELHRHIQIFKTQPC--HWT 208
           +II + CV    ++ E S I  T R+SP E H+H ++++ Q    HW+
Sbjct: 190 QIIQSPCVS--LQANENSMILTTSRFSPQESHQHDRLYEEQISTEHWS 235


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,502,994
Number of Sequences: 1657284
Number of extensions: 7263155
Number of successful extensions: 16723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16723
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)