Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D04
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   3.1  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   4.1  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   5.4  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   7.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.1  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   9.4  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 192 FCAFKSI-KVEKSPFYYILLLAINCNNFTSLI 100
           +C +KS+ + + +P YY  L+     N  SLI
Sbjct: 406 YCTYKSLMRTQFAPHYYYALVPFRATNTASLI 437


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -3

Query: 213 WTL*PLLFCAFKSIKVEKSPFYYILLLAINCNNFTSLIG*NKIFKSSNLK*LDCKNNEI 37
           WT   L     +++  +   F ++  L IN NN T L    +I K  NL  LD   N I
Sbjct: 160 WTCLDLGGIGLRNVSTDLFKFSFLTELYINHNNLTRLP--PEIGKLKNLVILDASGNSI 216


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 248 RWSSPGEYRWVLRIQEPSVLSGKSLTQPVLI 340
           RW    EY W   +     L+  SLT PV I
Sbjct: 338 RWCRVKEYSWNTSVLSDEALTRNSLTLPVPI 368


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 272 DIHPENSTGTFKSSKHSL 219
           D  PEN+T  F+S+K SL
Sbjct: 158 DFSPENTTNLFRSAKTSL 175


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 71  FELLKILFQPISDVKLLQFIANSSM**KGLFSTLIL 178
           F LLKILF  +  + LLQFI  S    +G FS +++
Sbjct: 548 FSLLKILFISLCILCLLQFIVYSYFHREG-FSVILM 582


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 7   GLKCYLCTYIYFVIFTI*LF 66
           GLKC L  +I FV+ +I +F
Sbjct: 207 GLKCSLADHIIFVVLSILVF 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,343
Number of Sequences: 5004
Number of extensions: 33068
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)