Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D04
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z70781-2|CAA94832.1|  396|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical
           protein K02F6.2 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = -3

Query: 324 VKDFPESTEGSCIRRTHRYSPGELHRHIQIFKTQPCHWTL*PLLFCAFKSIKVEKSPFYY 145
           V D+    E  C+  T   +  ++HRH+Q  +++  + T   +    FK IK + S F  
Sbjct: 160 VDDYKFQVEEVCMNSTSFKTCRQIHRHVQ--ESRIPYLTGVKVHLHLFKKIKKDLSKFIK 217

Query: 144 ILLLAINCNNFTS 106
            LL  + C  +T+
Sbjct: 218 DLLSELGCFVYTT 230


>Z70781-2|CAA94832.1|  396|Caenorhabditis elegans Hypothetical
           protein F57A8.4 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 219 CHWTL*PLLFCAFKSIKVEKSPFYYILLLAI 127
           C+W    +LF  F   K  KSP  Y+LLLA+
Sbjct: 47  CNW----ILFRLFTKSKSTKSPALYLLLLAV 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,945,915
Number of Sequences: 27780
Number of extensions: 179185
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)