Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D02
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383...    74   2e-13
07_01_0236 - 1725061-1727070                                           31   0.87 
06_03_0119 - 16849657-16849742,16850321-16850426                       30   2.0  
06_01_0272 + 2016836-2017963                                           29   6.2  
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966...    29   6.2  

>01_03_0161 +
           13337265-13337297,13337880-13338017,13338211-13338308,
           13338395-13338450,13338664-13338781,13338889-13338916,
           13339021-13339112,13339321-13339477,13339569-13339693,
           13339785-13339884,13339991-13340059
          Length = 337

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 10/234 (4%)
 Frame = +2

Query: 152 SASLANTSTGSVELDEISFNKVI-NKFEASLVKFDVAFPYGDKHDA--FVALAKDSKDVD 322
           +  LA   +  V L   +F+ ++ ++ +  LV+F   +    KH A  +  LA   K  D
Sbjct: 111 NVKLATIPSSVVVLGPDNFDSIVLDENKDILVEFYAPWCGHCKHLAPIYEKLASVYKLDD 170

Query: 323 ELLIAEVGVKDYGEKDNEVLAKKYGATKDNFPVVRLFLKGKNDPIPFDDSQGFTTDELRR 502
            ++IA +    +  KD   LA+KYG +   +P ++ F KG      +D   G   D+  +
Sbjct: 171 GVVIANLDADKH--KD---LAEKYGVS--GYPTLKFFPKGNKAGEDYDG--GRELDDFVK 221

Query: 503 FV-------RENTGLYLSLPGCVRSLDKLAIKFMKAKGENRKKVLKETEELQXXXXXXXX 661
           F+       R+  G   S  G + SLD LA +F+ A  + RK++L   EE          
Sbjct: 222 FINEKCGTSRDTKGQLTSEAGRIASLDALAKEFLGAANDKRKEILSNMEEEVVKLSGSAA 281

Query: 662 XXXXIYKTIMEKIIEKGDQFINTEHERVKKILSGKVSDEKKKEIGIRINILQTF 823
               +Y  I +KI++KG  +   E ER++++L   +S  K  E  I+ N+L TF
Sbjct: 282 KHGKVYIAIAKKILDKGHDYTKKETERLERMLEKSISPSKADEFIIKKNVLSTF 335


>07_01_0236 - 1725061-1727070
          Length = 669

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -3

Query: 285 ASCLSPYGNATSNFTREASNLFITLLNEISSNSTEPVDVFAREADSTAKN 136
           A  L+ + + T NF+R  SN F+ LLN+ ++ +T    +FA E D+   N
Sbjct: 106 AQGLTFFVSPTKNFSRAFSNQFLGLLNKKNNGNTSN-HIFAVELDTVLNN 154


>06_03_0119 - 16849657-16849742,16850321-16850426
          Length = 63

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -2

Query: 394 VLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISVWKCNV 251
           ++L Q +++F+TVIL   FS  +    F   R+ + +++ I +W+  +
Sbjct: 10  LVLMQIIMVFYTVILSCSFSDARTFPEFFTQRDKDLTMLSIVLWQATI 57


>06_01_0272 + 2016836-2017963
          Length = 375

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 272 DKHDAFVALAKDSKDVDELLIAEVGVKDYGEKDNEVLAKKY 394
           DK   +V   ++S  V+E L A  G      KD+ V+ KKY
Sbjct: 274 DKPGDYVVATEESHTVEEFLQAAFGYAGLNWKDHVVIDKKY 314


>05_06_0166 +
           26093618-26095381,26095820-26096039,26096345-26096674,
           26097481-26098029,26098366-26098426,26099737-26099824,
           26100240-26100299
          Length = 1023

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 692 EKIIEKGDQFINTEHERVKKILSGKVS 772
           E I+ +G + +N EH R   I+ GKVS
Sbjct: 913 ENIVLQGREVVNNEHGRQNSIVRGKVS 939


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,767,338
Number of Sequences: 37544
Number of extensions: 313527
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)