Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D02
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 53   3e-07
SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)                 49   4e-06
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           30   2.1  
SB_42630| Best HMM Match : Ets (HMM E-Value=0)                         30   2.7  
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)                     30   2.7  
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)                     29   4.7  
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)                28   8.3  

>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 29/94 (30%), Positives = 47/94 (50%)
 Frame = +2

Query: 542 GCVRSLDKLAIKFMKAKGENRKKVLKETEELQXXXXXXXXXXXXIYKTIMEKIIEKGDQF 721
           G + + D  A++FMK K + R  V    +                Y  +ME++  KGD F
Sbjct: 195 GRINAFDGFAVEFMKNK-DGRDNVYNNAKS--AVDKQDDQKMATYYVKVMERVQSKGDSF 251

Query: 722 INTEHERVKKILSGKVSDEKKKEIGIRINILQTF 823
           I TE  R++++L G++S  KK +  +R N+L  F
Sbjct: 252 IQTETSRLERLLEGQISAGKKDQFIMRKNVLSQF 285


>SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)
          Length = 83

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 24/50 (48%), Positives = 35/50 (70%)
 Frame = +2

Query: 674 IYKTIMEKIIEKGDQFINTEHERVKKILSGKVSDEKKKEIGIRINILQTF 823
           +Y  IM+KI EKG  +I+TE  RVKK+L  K+++ KKK    R++IL +F
Sbjct: 24  MYVKIMKKIQEKGTGYIDTEITRVKKLLKDKLTENKKKAFHDRLDILTSF 73


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 25/87 (28%), Positives = 42/87 (48%)
 Frame = -3

Query: 285 ASCLSPYGNATSNFTREASNLFITLLNEISSNSTEPVDVFAREADSTAKNTTGTRKLRSI 106
           ++ +SP  N T+N TREA++  I  L  +  N+T    + A  A STA  T     + ++
Sbjct: 465 SASISP--NVTTNMTREANSTMILPLTSVPYNTTL---IPAPNATSTAATTMSPSYVANM 519

Query: 105 VLNEHN**LERSILREKRITILKHELL 25
              + +  L RS+L    I  +   +L
Sbjct: 520 TTLDSSVSLTRSLLSTTLIPSISTSIL 546



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 25/87 (28%), Positives = 41/87 (47%)
 Frame = -3

Query: 285 ASCLSPYGNATSNFTREASNLFITLLNEISSNSTEPVDVFAREADSTAKNTTGTRKLRSI 106
           ++ +SP  N T+N TREA++  I  L  +  N+T    + A  A STA  T     + ++
Sbjct: 63  SASISP--NVTTNMTREANSTMILPLTSVPYNTTL---IPAPNATSTAATTMSPSYVANM 117

Query: 105 VLNEHN**LERSILREKRITILKHELL 25
              + +  L RS L    I  +   +L
Sbjct: 118 TTLDSSVSLTRSSLSTTLIPSISTSIL 144


>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
          Length = 631

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 576 LIASLSKLLTQPGKLRYKPVFSRTNRRSSS 487
           L++S     T PG+L Y P  S T+RRSSS
Sbjct: 80  LVSSPLPSPTSPGELPYLPTLSPTSRRSSS 109


>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 732

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = +2

Query: 560 DKLAIKFMKAKGENRKKVLKETEELQXXXXXXXXXXXXIYKTIMEKIIEKGDQFINTEHE 739
           ++LA +  K   E RK + KE E+ +              K  +EK  E  ++ +  EH+
Sbjct: 206 ERLAKEVTKTLEELRKTMQKELEDAKVKLEQEKKDSVKKLKERLEKERESEEERLQKEHD 265

Query: 740 RVKKILSGKVSDEKKKE 790
            V + L  K  ++  +E
Sbjct: 266 AVMRTLGDKAREDTLEE 282


>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 977

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 576 LIASLSKLLTQPGKLRYKPVFSRTNRRSSS 487
           L++S     T PG+L Y P  S T+RRSSS
Sbjct: 426 LVSSPLPSPTSPGELPYLPTLSPTSRRSSS 455


>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
          Length = 687

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 24/83 (28%), Positives = 38/83 (45%)
 Frame = -3

Query: 261 NATSNFTREASNLFITLLNEISSNSTEPVDVFAREADSTAKNTTGTRKLRSIVLNEHN** 82
           N T N TREA++  I     +S N+T P    A    +TA + +    + ++V + +   
Sbjct: 51  NVTLNRTREANSTMILSPTSVSYNTTLPPAPDATSTATTAISPSSVANMTTLVSSVN--- 107

Query: 81  LERSILREKRITILKHELLSIIT 13
           L RS L    I  +   +LS  T
Sbjct: 108 LTRSSLSTTLIPSISTSILSYNT 130


>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
          Length = 341

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 413 FPVVRLFLKGKNDPIPFDDSQGFTTDELRR 502
           +  V LF+K +  P+ + +++G+ T+E R+
Sbjct: 41  YKAVELFVKLEGKPVQYREAEGYETEEFRK 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,545,209
Number of Sequences: 59808
Number of extensions: 387963
Number of successful extensions: 1281
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)