Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_D02
(845 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 32 0.45
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 29 5.5
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 29 5.5
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 29 5.5
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 29 5.5
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 29 5.5
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 29 5.5
Z70781-7|CAJ55254.1| 380|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z83237-3|CAB05787.1| 460|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical pr... 28 9.6
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 695 KIIEKGDQFINTEHERVKKILSGKVSDE--KKKEIGI 799
K +EK F+NT HE KK+ G + D+ KKK+IGI
Sbjct: 154 KHVEKA--FVNTAHEIYKKLKLGVIEDDDVKKKKIGI 188
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 563 KLAIKFMKAKGENRKKVLKETEELQXXXXXXXXXXXXIYKTI--MEKIIEKGDQFINTEH 736
+L + MKA+ E R ++ KE EE++ + + MEK +E+ ++ +N +
Sbjct: 204 QLELTEMKARQEERDRLTKEKEEMRQRMSDEMSEMRNNIERLQKMEKALERENERLNHQK 263
Query: 737 ERVKKILSGKVSDEKKKEIGIRINILQTFL 826
E K+ KV +E+ + +R N+ + L
Sbjct: 264 ELSDKL---KVVNEENND--LRQNLAENHL 288
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 379 LFVSGNNGQVPFEFTEHFTTKQKRPF 404
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 LFLKGKNDPIPFDDSQGFTTDELRRF 505
LF+ G N +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369
>Z70781-7|CAJ55254.1| 380|Caenorhabditis elegans Hypothetical
protein F57A8.2b protein.
Length = 380
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -2
Query: 433 EESHHRKIIFCSSVLLCQYLVIFFTVILHADFSYQKF 323
EE RK+I + V++ Q L++++ + +++ Y KF
Sbjct: 300 EEGRKRKLILVAFVVITQPLIMWWLTSVASNYDYDKF 336
>Z83237-3|CAB05787.1| 460|Caenorhabditis elegans Hypothetical
protein R06B9.3 protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 843 GCLSYKRNVCKILIRMPISFFFSSETLPLRIFLTLSCSV 727
GC +K+ ++ + +P + F ET+P+ I + SV
Sbjct: 177 GCCCFKKGYLELRVNIPKTGFVPGETVPMNIHILNHSSV 215
>Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical
protein W02A11.8 protein.
Length = 266
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +2
Query: 221 NKFEASLVKFDVAFPYGDKHDAFVALAKDSK---DVDELLIAEVG-----VKDYGEKDNE 376
NKFE+ + D +GD + A D K + D +I EVG ++D+GE+ +
Sbjct: 55 NKFESIAMSAD----FGDFDEMVYNYAIDGKCTIEADITIIKEVGDARAKLRDFGEETRD 110
Query: 377 VLAKKYGATKDNFPVVRLFLKGKN 448
V + F V ++FL ++
Sbjct: 111 VSDVVINVQNEKFHVSKMFLAAQS 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,263
Number of Sequences: 27780
Number of extensions: 324246
Number of successful extensions: 1046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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