Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D02
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +2

Query: 119 FLVPVVFLAVL 151
           FL+P+VF+AVL
Sbjct: 214 FLIPMVFIAVL 224


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 231 SNLFITLLNEISSNSTEPVDVFAREADST 145
           S+LF+T+  ++     +  D FA  AD T
Sbjct: 176 SSLFVTIAVDVRDTEDKCKDTFAYIADVT 204


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 522  PVFSRTNRRSSSVVKPWESSNGIGSFL 442
            PV   T+  SSS++  W+S +  G+ L
Sbjct: 1408 PVLYVTSSTSSSILLHWKSGHNGGASL 1434


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 522  PVFSRTNRRSSSVVKPWESSNGIGSFL 442
            PV   T+  SSS++  W+S +  G+ L
Sbjct: 1404 PVLYVTSSTSSSILLHWKSGHNGGASL 1430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,497
Number of Sequences: 438
Number of extensions: 3827
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)