Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C24
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           27   0.24 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   9.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   9.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   9.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   9.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 385 YIFGGPLDNEYEIDGLHFHWGD 450
           + +  PL ++YE+ GL F W D
Sbjct: 352 FFYPDPLASKYELHGLKFQWTD 373


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 301 TITNTGHSVALTIPKYTSEE 360
           TI +  H     +PKYT+EE
Sbjct: 423 TILDYYHKYKENLPKYTTEE 442


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 301 TITNTGHSVALTIPKYTSEE 360
           TI +  H     +PKYT+EE
Sbjct: 423 TILDYYHKYKENLPKYTTEE 442


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 301 TITNTGHSVALTIPKYTSEE 360
           TI +  H     +PKYT+EE
Sbjct: 49  TILDYYHKYKENLPKYTTEE 68


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = -3

Query: 766 DHG-NYPFETRKWAG 725
           DH  NYPF+  +W G
Sbjct: 64  DHTKNYPFDVDQWRG 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,541
Number of Sequences: 438
Number of extensions: 6679
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)