Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_C23
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 31 0.29
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 31 0.29
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.29
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 29 0.88
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.88
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 28 1.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 1.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 2.0
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 2.0
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 28 2.0
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 2.7
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 27 4.7
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 6.2
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 6.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.2
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 26 8.2
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +1
Query: 523 PTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKV 702
PT KK + ++ K + ++ +E N + VK + L+ ++EK P W + +
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAWESRRKIMDAI 590
Query: 703 KEEEV 717
+ +V
Sbjct: 591 QHSQV 595
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +1
Query: 337 GKPKNIDDANEAMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDL 504
G ID++ +KR + +Y +++ + + LE ++++ + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +1
Query: 511 KFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPG 690
K K +++++ + ++ A +++K + ++ KK+ ++D+ K D K K G
Sbjct: 49 KMAKRSVEELKRSADEEASVKRKEKKSKHEHKKH---KKDKPSADKDRISKKDKKKSKKG 105
Query: 691 DQKVKEEEVE 720
K KEE +E
Sbjct: 106 KSKTKEESIE 115
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 592 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 696
+FRNQ+K ++ L E+ KE W +G DQ
Sbjct: 1070 DFRNQIKSQTERILVLREKKKEDPISWMEGTMEDQ 1104
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.1 bits (62), Expect = 0.88
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 550 ENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQK--VKEEEVE 720
+N F K E NF + +K K +FT E+K + K P +QK +K+++ E
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDE 312
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 397 YYDRM-YVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQ 573
YY ++ Y C + W++ ++ + +Y SD + +F K T+ V+ Y F +
Sbjct: 541 YYKKLKYACTPKSWNISDDLGQVEYIFSDKTGTLTQNVMEFKKCTINGVA-YGEAFTEAM 599
Query: 574 KKAAEFNFRNQLKVVKKKEFTLEEE 648
A+ ++ ++ +K+ +E +
Sbjct: 600 AGMAKREGKDTEELTLQKQSFIERD 624
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Frame = +1
Query: 445 HEVRKRDY-----EISDLNSQVNDLRGKFVKPTLKKVS-KYENKFAKLQKKAAEFNFRNQ 606
+E KRDY E +L QVN+L+G V P S ++ N ++ KA ++Q
Sbjct: 1414 YENLKRDYDRLNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKA----LKDQ 1469
Query: 607 LKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEV 717
+ K K F+++ + ++++ + K +KV ++ +
Sbjct: 1470 INSEKAKMFSVQVQYEKREQELQKRIASLEKVNKDSL 1506
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = +1
Query: 379 KRIIQEYYDRMYVCEGQKW--DLEHE-VRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKY 549
+R++Q Y +++ K ++E E RK++ E+ + + K K+ +
Sbjct: 554 QRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQ 613
Query: 550 ENKFAKLQKKAAE--FNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 720
+ +L ++AA+ + Q + KK+E + ++EKK + + ++K K++E E
Sbjct: 614 RREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKERE 672
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 490 QVNDLRGKFVKPTLKKVSK-YENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKP 666
Q N +RG+ + + K+ K Y+N+ ++K + +++ + + + P
Sbjct: 418 QGNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSSRKRTRSP 477
Query: 667 DWSKGKPGDQK 699
SKGK D+K
Sbjct: 478 LMSKGKSYDRK 488
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 27.9 bits (59), Expect = 2.0
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Frame = +1
Query: 403 DRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKA 582
D VCE E + KR S S+ G + P KK+ K K K KK
Sbjct: 149 DEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDP--KKLEKITKKKKKEHKKK 206
Query: 583 AEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGD----QKVKE 708
+ + K+K + ++E+K+KK K KP +KVKE
Sbjct: 207 DK-----ESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSSVEKVKE 247
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 538 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE-DKEKK 663
+ K +NK + Q+ + +N+ K+ ++KE EEE D EKK
Sbjct: 1 MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 616 VKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 720
++ E+ L++E+KE+K K + +K KE+E E
Sbjct: 275 IESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 574 KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 696
KK + R +++ K ++DK KP+ GKP D+
Sbjct: 22 KKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPADR 62
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 352 IDDANEAMLKRI--IQEYYDRMYVCEGQKWDLEHEVRKRDY---EISDLNSQVNDLRGKF 516
I +A AML + Y Y+ ++W++ + ++R+ + D SQV D KF
Sbjct: 863 IQNAGSAMLPSFSNLPNLYSSSYL---EEWNVFAQYKRRESNATDFEDFRSQVGDDESKF 919
Query: 517 VKPT 528
+PT
Sbjct: 920 DEPT 923
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 508 GKFVKPTLKK-VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGK 684
G+ + P L + + +E++F Q+ AE+ + Q + + + TLE + + W +G
Sbjct: 1385 GEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRRLTLE----DLEDSWDRGI 1440
Query: 685 P 687
P
Sbjct: 1441 P 1441
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 94 CWFRVSYWQELEDGPTRWF 38
CW ++ + Q+LE+GP + F
Sbjct: 579 CWSKIIHIQKLENGPLKTF 597
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,059
Number of Sequences: 5004
Number of extensions: 51214
Number of successful extensions: 178
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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