Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C23
         (886 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   2.3  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.3  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   3.1  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   7.1  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    24   7.1  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   9.4  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 120 EEGQTGRNRPEAR*GAQAHG-GGLQSQKGEEGF 215
           E GQ G   P  +  A   G  GL+ QKGE GF
Sbjct: 496 EPGQPGYGIPGQKGNAGMAGFPGLKGQKGERGF 528


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +1

Query: 547 YENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEV 717
           Y N+    + K  + + + +L +++K++   +E  KEKK +  K    +   KE+E+
Sbjct: 239 YHNEKEAKRLKEDQISKQQELNIIEKRKEEADEVLKEKKKEVGK-MTREMAKKEQEI 294


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 477  RPELPSQRPQRQIRQAHTKEGF-QIRKQIRQAPEEGRR 587
            RP +PS  P+   R+A+ +    ++R++ RQ  ++ RR
Sbjct: 1073 RPSMPSSSPRTSERRANIRARMARLRQRHRQHQQDERR 1110


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 535 KVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKP 666
           +++  E K  +L++K AE       K  KKKE   ++ED+++ P
Sbjct: 30  RIADEEAKQRELERKRAEGESDFGRKK-KKKEIRYDDEDEDEGP 72


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +3

Query: 477 RPELPSQRPQRQ----IRQAHTKEGFQIRKQIRQAPE 575
           RP+  + RP RQ    +     K  +Q+ KQIR+APE
Sbjct: 235 RPQ--TTRPNRQDIIEVTSFTGKMWYQVYKQIREAPE 269


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 489 PSQRPQRQIRQAHTKEGFQIRKQIRQAPEEGRRIQ 593
           P Q+ QRQ +Q H +   Q ++Q +Q  ++ ++ Q
Sbjct: 217 PQQQEQRQQQQQHQQREQQQQQQQQQQQQQQQQQQ 251


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 729,320
Number of Sequences: 2352
Number of extensions: 13770
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95093730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)