Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C22
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      172   3e-43
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      159   2e-39
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                   152   4e-37
SB_37957| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     30   2.6  
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)            29   3.4  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        29   4.5  
SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1)                 29   5.9  
SB_3247| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.9  
SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)                    29   5.9  
SB_7872| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  172 bits (418), Expect = 3e-43
 Identities = 78/114 (68%), Positives = 95/114 (83%)
 Frame = +2

Query: 470 QAGADISMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGR 649
           +AGADISMIGQFGVGFYS+YLVA++V V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGR
Sbjct: 59  KAGADISMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGR 118

Query: 650 GTKIVLHVKEDLAEFMXXXXXXXXXXXXSQFIGYPIKLMVEKEREKELSDDEAE 811
           GTKIVL++KED  E++            SQFIGYP+ L+V+KER+KE+SDDE E
Sbjct: 119 GTKIVLYLKEDQTEYLEEKRIKEIVKKHSQFIGYPLSLLVQKERDKEVSDDEEE 172


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  159 bits (387), Expect = 2e-39
 Identities = 103/228 (45%), Positives = 128/228 (56%), Gaps = 1/228 (0%)
 Frame = +2

Query: 128 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS 307
           +M+    + E   FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR  SLTD +
Sbjct: 68  QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIRLMSLTDKT 127

Query: 308 KLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADI 487
             DSG EL IKI  +K    L + DTGIGMTK +L+ NL      GT A           
Sbjct: 128 AFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNL------GTIA----------- 170

Query: 488 SMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRGTKIV 664
                       S  +ADRV V SK+NDD+QY+WES A  SF++  D  G  L RGT I 
Sbjct: 171 -----------KSGTIADRVIVTSKNNDDKQYIWESDA-SSFSISEDPRGPTLKRGTTIS 218

Query: 665 LHVKEDLAEFMXXXXXXXXXXXXSQFIGYPIKLMVEKEREKELSDDEA 808
           LH+KE+  +++            SQFI +PI L   K  E E   D+A
Sbjct: 219 LHLKEEARDYLEPETIKDLVKKYSQFINFPIFLWTSKTTEVEEPIDDA 266


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score =  152 bits (368), Expect = 4e-37
 Identities = 84/225 (37%), Positives = 135/225 (60%), Gaps = 6/225 (2%)
 Frame = +2

Query: 107 AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 283
           +V+ + E  + +  E  +     ++ + + L++++  +   ++F+RE+ISN+SDAL+K+R
Sbjct: 43  SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102

Query: 284 YESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFME 463
           +  LT     ++   L I I  ++  GT TI D G+GMT+ +L+++LG IAKSG+K FME
Sbjct: 103 HFFLTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFME 162

Query: 464 ALQAGADIS---MIGQFGVGFYSSYLVADRVTVHSK--HNDDEQYVWESSAGGSFTVRPD 628
            L+  A  S   +IGQFGVGFYS+++VAD+V V++K    + + Y W S   GS+     
Sbjct: 163 KLKNEARSSHENIIGQFGVGFYSTFMVADKVDVYTKSYQPNSQGYFWTSDGSGSYEYAEA 222

Query: 629 SGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXXXXSQFIGYPIKL 763
           +G  + RGTK+VLH+KED   F             S F+G+PI L
Sbjct: 223 NG--VARGTKLVLHLKEDCKRFAMKTAVEDIVQRYSNFVGFPIYL 265


>SB_37957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +3

Query: 498 DSSVLASTPVTWSLTA*LFTLNTMTTSNTCGNLLQEARSQSAQTAVSPLVEVQRSSFTSK 677
           + S    TPVT   T+    +   TTS T G ++   + +++ T  +PLV  +R+SFT +
Sbjct: 54  EKSTKRKTPVTKGTTS----VTKETTSVTKG-IISVTKGEASITIGAPLVTKERTSFTKE 108

Query: 678 RTWQN--SWKNTKSKRS 722
            T  N  + ++TK   S
Sbjct: 109 TTLVNKRAMQDTKEVES 125


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +3

Query: 480 PTSA*LDSSVLASTP--VTWSLTA*LFTLNTMTTSNTCGNLLQEARSQSAQTAVSPLVEV 653
           PTS   DS++ AS+P  VT +L+   FT  ++ ++ T   L       S    ++  V +
Sbjct: 271 PTSLVNDSTIFASSPVDVTPALSTKSFTSISLDSTRT-STLSASVDETSTSIKLNSSV-I 328

Query: 654 QRSSFTSKRTWQNSWKNT 707
           +RS  TS   WQNS  N+
Sbjct: 329 KRSLLTSS-LWQNSLANS 345


>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +2

Query: 74  PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 253
           PS   V    KA  K  +E ET+P E+   +F+ +   ++        S+  +FLR  I 
Sbjct: 71  PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123

Query: 254 NSSDALDKI 280
             SDA +KI
Sbjct: 124 LRSDASEKI 132


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +2

Query: 305 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 475
           +K+  G+E+   +  ++NE     ++  +G ++ D++ N+G      T++ +E  +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +1

Query: 328 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 495
           AV   H+   RGHS+      W       G F + FG+    W    + G+S  CR    
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204

Query: 496 WTVRCWLLLQ 525
           W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214


>SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1)
          Length = 365

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
 Frame = +2

Query: 245 LISNSSDALDKIRY--ESLTDPSKLDSGKELYIKI--IPNKNEGTLTIIDTGIGMTKADL 412
           LIS+S +  ++ R+  E +   S+L S + +Y +     N+N   L I+D+ I   +A+ 
Sbjct: 283 LISSSDEENNQERFKEEKIATSSQLSS-ERVYQRTQEANNQNNRLLGIVDSNILKARANA 341

Query: 413 VNNLGTIAKSGTKAFMEALQAGA 481
            N LG  A S +++  +  Q  A
Sbjct: 342 GNKLGKSAMSRSRSAAQRRQLAA 364


>SB_3247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 182 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS-KLDSGKELYIKIIPNKN 358
           AQ+  L+ ++ + N +    ++ +  S ALD++ YE   DP  K DS ++++I +  N+ 
Sbjct: 20  AQVCELLKDSQFLNMDATDAQIHTVVSGALDRLHYEK--DPCVKYDSNRKVWIYLHRNRT 77

Query: 359 E 361
           E
Sbjct: 78  E 78


>SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)
          Length = 433

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 574 VVIVFRVNS-HAVSDQVTGVEANTELSNHADVGTCLKSLHESFSTRFRDGSQIV 416
           +V+  + N+ H ++ QV     + + + H   G CLKSL   F  + RDG   V
Sbjct: 374 IVLSLKFNTGHEMNVQVQSKLYSVKDNTHVTWGACLKSL--DFECKMRDGQSFV 425


>SB_7872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 263 DALDKIRYESLTDPSKLDSGKELYIKIIPNKNE 361
           DAL K+R +   +PS +D G E+ ++    +N+
Sbjct: 32  DALSKLRQKEYAEPSGIDEGDEVLLRQTRRENK 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,113,877
Number of Sequences: 59808
Number of extensions: 561792
Number of successful extensions: 1787
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1782
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)