Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C16
         (884 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.60 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   4.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.7  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   9.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 819 PVNQPGPCCRAC 784
           PV++PG CC+ C
Sbjct: 97  PVHRPGRCCKTC 108



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 753 TVEPVPLPATCKPYSTD 803
           TV  V  P+TC+P + D
Sbjct: 639 TVRHVMAPSTCQPQNPD 655


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 336 YPEEDTPEEIIQRRGVVLSEL 398
           YP E+  EE+ ++ G+ +S++
Sbjct: 257 YPSEEAKEELARKCGITVSQV 277


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 474 MRDPKTLINHLSTNKEYEFKIEMIDSM 554
           + DP T    L+TN+ YE  +   DS+
Sbjct: 144 LSDPNTNKLKLNTNESYELTVLKSDSL 170


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 822 RPVNQPGPCC 793
           +P   PGPCC
Sbjct: 328 KPKEVPGPCC 337


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 544 SIACIVWPNIAMNVEIMWSQ 603
           S+   +WP  A   E++WS+
Sbjct: 530 SVDTRLWPRAAALGEVLWSE 549


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,400
Number of Sequences: 336
Number of extensions: 4754
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)