Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_C16
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 153 2e-38
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 33 0.054
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 29 0.67
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 1.2
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 29 1.2
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 2.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.7
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 27 4.7
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 8.2
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 8.2
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 8.2
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 8.2
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 153 bits (372), Expect = 2e-38
Identities = 80/198 (40%), Positives = 122/198 (61%), Gaps = 3/198 (1%)
Frame = +3
Query: 159 KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML- 335
K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D ELLQAK ++L TNM DYV ++ L
Sbjct: 14 KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73
Query: 336 --YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLS 509
+ +ED ++R VL EL EL++ V+ +L +++ D++ + +D + HL
Sbjct: 74 GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130
Query: 510 TNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASE 689
+ Y E I +Y+ A+++Y CGNY ++ LY + + N S WGK ASE
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWGKFASE 188
Query: 690 ILVQNWDGALDDLTKLRE 743
IL +WDGA+++L KLRE
Sbjct: 189 ILTVDWDGAMEELGKLRE 206
Score = 42.7 bits (96), Expect = 7e-05
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 799 RTWLVHWSLFVFFNHVKGRDLIIEMXLY 882
RTWL+HWSLF FNH G D + ++ Y
Sbjct: 223 RTWLLHWSLFPLFNHANGCDTLCDLFFY 250
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 33.1 bits (72), Expect = 0.054
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = -1
Query: 659 QIILVSWRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRI 480
Q++ V W+HHQ C I + F IFGQ I AID ++ KL + + +SF
Sbjct: 332 QLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSAKLYKISQQIENARSFDY 384
Query: 479 P 477
P
Sbjct: 385 P 385
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 29.5 bits (63), Expect = 0.67
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 462 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNY 593
T+ T+ D ++ HL+ +F + ++M++ ++YRY N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 174 FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 293
F I +YL +L+ P LEF L A E Q + A ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = -1
Query: 584 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 423
TF+ +G I+ D +N L +VY ++ + F+ + ++S+++SQ W
Sbjct: 83 TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 273 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDD 452
K+ + S N I Y + +L P+E ++ RG+ + Q +++ E VL+
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247
Query: 453 VMK 461
V K
Sbjct: 248 VCK 250
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 447 DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 569
+DV+K + T+ PK +I L ++ +EF I+ ID ++ +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 714 RHPNFVPKFR*PIYP-KEPTNNSCQLATSPVDKSKDMM 604
R FVP P P K P L +P+DK +DMM
Sbjct: 162 RTKKFVPTHSHPSAPNKPPFETVAGLFAAPIDKLRDMM 199
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 8.2
Identities = 27/119 (22%), Positives = 45/119 (37%)
Frame = +3
Query: 393 ELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKY 572
E + L + E + D + I+ + N+ TN +Y+ + +Y +Y
Sbjct: 56 ETESLMSSHEASNAGISLDSSFRVIQVGQPEPQYGNNAVTNTKYDLFTFLPKCLYEQFRY 115
Query: 573 RYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGALDDLTKLRESS 749
Y + S S L + P YLS L +L+ A+DDL + R S
Sbjct: 116 FYNMYFLLVSLSQL------IPPLKIGYLSTYIAPLIFVLLITLTKEAVDDLKRRRRDS 168
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 420 EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 539
+PV+R+ + I + + P+ L H S K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 648 CQLATSPVDKSKDMMLTPHNFHIHSDIW 565
C++ V KS D+ + H F ++SD W
Sbjct: 506 CRMEHPNVVKSYDLCIDSHIFPLYSDTW 533
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 312 VTDIRRMLYPEEDTPEEIIQRRGVVLSELQ-ELQDAVEPVL 431
VTDI+ +L + DTP ++ G + L+ +EP+L
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLL 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,613,183
Number of Sequences: 5004
Number of extensions: 77034
Number of successful extensions: 225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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