Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C16
         (884 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     113   1e-25
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     91   1e-18
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)                  36   0.058
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.71 
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   31   1.6  
SB_1632| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)            29   3.8  
SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)            29   3.8  
SB_51330| Best HMM Match : C1_3 (HMM E-Value=2.5)                      29   3.8  
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  29   5.0  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   8.7  
SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 399

 Score =  113 bits (273), Expect = 1e-25
 Identities = 58/147 (39%), Positives = 88/147 (59%)
 Frame = +3

Query: 303 IDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRD 482
           +D+  D+ + LYP+E+ P  ++++R  V+ EL++LQ   EP+            I    D
Sbjct: 6   VDFAMDVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPI------------INCFSD 53

Query: 483 PKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLS 662
           P+            + K EM+D +Y+ AK++YECGNY  +A YLYF + +    D N L+
Sbjct: 54  PEFTA---------QIKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLN 104

Query: 663 VLWGKLASEILVQNWDGALDDLTKLRE 743
            LWGKLASEIL+QNWD AL+DL +L++
Sbjct: 105 ALWGKLASEILMQNWDTALEDLNRLKD 131



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 23/28 (82%), Positives = 26/28 (92%)
 Frame = +1

Query: 799 RTWLVHWSLFVFFNHVKGRDLIIEMXLY 882
           RTWL+HWSLFVFFNH KGRDLII++ LY
Sbjct: 148 RTWLIHWSLFVFFNHPKGRDLIIDLILY 175


>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 38/68 (55%), Positives = 52/68 (76%)
 Frame = +3

Query: 540 MIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGAL 719
           M+D +Y+ AK++YECGNY  +A YLYF + +    D N L+ LWGKLASEIL+QNWD AL
Sbjct: 1   MLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQNWDTAL 60

Query: 720 DDLTKLRE 743
           +DL +L++
Sbjct: 61  EDLNRLKD 68



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 23/28 (82%), Positives = 26/28 (92%)
 Frame = +1

Query: 799 RTWLVHWSLFVFFNHVKGRDLIIEMXLY 882
           RTWL+HWSLFVFFNH KGRDLII++ LY
Sbjct: 185 RTWLIHWSLFVFFNHPKGRDLIIDLILY 212


>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
          Length = 829

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +3

Query: 417 VEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYV 596
           +E  ++L +   V +T  T    + L N L   KEY+  +E+    YRL K R   G + 
Sbjct: 708 MEKAIKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRKER--LGTHP 765

Query: 597 ESASYLYFCQLV 632
           E+A  LY   ++
Sbjct: 766 ETARILYMIGVI 777


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 309 YVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKT 464
           Y+ D   ++YP  DT  EII +  V +  ++E  + +  VL  ++R+ + KT
Sbjct: 215 YLVDCPGVVYPTGDTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAKT 266


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 327 RMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLR-LMQRDDVMKTIETMRDPKTLINH 503
           R LYPE +     + +  V    + ELQ A+    R L+++   + TI  + D KTL+ H
Sbjct: 511 RELYPETEPAGLFVAKVDVSEVPMAELQAALPAFERQLLRKGYGLYTISGVLDRKTLVEH 570

Query: 504 LSTNKEYEFKIEMIDSM 554
           L  ++ +  + ++  +M
Sbjct: 571 LCASEGFREQGDLAAAM 587


>SB_1632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 700

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 672 GKLASEILVQNWDG-ALDDLTKLRESSITVEPVPLPATCKPYSTDLAGSLVAIRVLQSCQ 848
           GKL +E +V+NWD   L  LT LR      E +     C      +A +++   +L++C 
Sbjct: 424 GKLINEGIVRNWDDPRLFTLTALRRRGFPAEAI--NKFCSKVGVTMAQTVIDPLMLEACV 481

Query: 849 R 851
           R
Sbjct: 482 R 482


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
 Frame = +3

Query: 369  QRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK-TLINHLST-----NKEYEF 530
            +R   +L +++EL   V+ + + +++  ++K ++ + D K TLI   +T     NKE+E 
Sbjct: 1855 EREKELLQQVEELSTQVKTLEQRIEQLVIVK-MDALHDQKATLIEEHNTAIEKLNKEHEA 1913

Query: 531  KIEMIDSMYR 560
            K+E ++ +Y+
Sbjct: 1914 KLESVERLYK 1923


>SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)
          Length = 58

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 504 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 602
           +S N  YE K++   S  RLAK+R+   +Y E+
Sbjct: 15  MSCNSSYEAKLKRSSSRMRLAKHRHILHHYTEN 47


>SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)
          Length = 45

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 504 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 602
           +S N  YE K++   S  RLAK+R+   +Y E+
Sbjct: 2   MSCNSSYEVKLKRSKSRMRLAKHRHILHHYTEN 34


>SB_51330| Best HMM Match : C1_3 (HMM E-Value=2.5)
          Length = 506

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 588 NYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGALDDLTKLRESSIT 755
           N +++  Y++   +  S  DK++  V  GK++    +  W G +  L  +RE++IT
Sbjct: 275 NVMKTTKYVFIEHMPCSECDKDH-QVCLGKVSESTRLYLWLGYVSGLAMVRETNIT 329


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/63 (25%), Positives = 35/63 (55%)
 Frame = +3

Query: 234  AKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQD 413
            A+ET +  + LQ K     K  + + ++D+   +  EE+    + + +  +L E+Q+L+D
Sbjct: 934  AQETEEMRQRLQTK-----KNELEELLSDLEGRITEEEENVLALTEDKKKLLKEIQDLED 988

Query: 414  AVE 422
            ++E
Sbjct: 989  SLE 991


>SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 504 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 602
           LS N  YE K++   S  RLAK+R+   +Y E+
Sbjct: 37  LSCNLNYEAKLKRSKSRLRLAKHRHILHHYTEN 69


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
 Frame = +3

Query: 342  EEDTPEEIIQRRGVVLSE--LQELQDAVEPVLRL------MQRDDVMKTIETMRDPKTLI 497
            EED  E+ I    +      LQEL++ VE + R         RDD+ K  ET+   K ++
Sbjct: 1215 EEDEEEDAIYEETIEKQNKRLQELKEEVENLKRKNGIEEKRLRDDINKLSETLEKEKRMV 1274

Query: 498  NHL---STNKEYEFK 533
            N L   +T ++ +F+
Sbjct: 1275 NQLKNEATEQKNDFR 1289


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/94 (21%), Positives = 41/94 (43%)
 Frame = +3

Query: 384  VLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRL 563
            ++ +++ELQ+  E      QR+D  +  E +R   +L+      +  E   +M +   + 
Sbjct: 2663 LIQQMRELQNQSEKYRFQKQREDCEREKEHLRQQVSLMRSKGNTQSEELIQQMRELQNQS 2722

Query: 564  AKYRYECGNYVESASYLYFCQLVMSPTDKNYLSV 665
             KYR++  +     S      + MSP  ++   V
Sbjct: 2723 EKYRFQVDDLTRQLSRK---DITMSPQSQSRTEV 2753


>SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 428 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 309
           Y+L+CIL+ L+  KNY    +  F   F  ++H+  +S +
Sbjct: 57  YFLHCILESLKRGKNYVRIFFADFSKGFDLVDHNVLMSEL 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,614,917
Number of Sequences: 59808
Number of extensions: 563452
Number of successful extensions: 1347
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)