Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C16
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...   146   1e-35
Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z81042-4|CAB02796.1|  272|Caenorhabditis elegans Hypothetical pr...    31   0.83 
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    31   1.1  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z82073-6|CAB04924.1|  333|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF260242-1|AAF97548.1|  333|Caenorhabditis elegans palmitoyl-CoA...    28   7.7  

>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score =  146 bits (355), Expect = 1e-35
 Identities = 72/198 (36%), Positives = 124/198 (62%), Gaps = 3/198 (1%)
 Frame = +3

Query: 156 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 335
           S FDLT ++  +LD HL+ PLLEF+  +  YD+  L +   ++L+KTNMID V +     
Sbjct: 2   STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIET---- 57

Query: 336 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK---TLINHL 506
           Y  +  P  I  ++  ++ E  EL+  V+ V+ +++  +V + ++  R+      ++ HL
Sbjct: 58  YNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNVRILEHL 117

Query: 507 STNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLAS 686
           + N  + F ++M+D++++ +K+ YECGNY  ++  LY+ + +++  D NYL+ L+GKLAS
Sbjct: 118 TQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLAS 175

Query: 687 EILVQNWDGALDDLTKLR 740
           EIL+Q W+ A DDL KLR
Sbjct: 176 EILLQEWEHARDDLLKLR 193



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 793 TARTWLVHWSLFVFFNHVKGRDLIIEMXL 879
           T R WL+HW+LFV++N+ KGRD IIEM L
Sbjct: 209 TQRAWLMHWALFVYYNYPKGRDEIIEMFL 237


>Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical
           protein T16H12.2 protein.
          Length = 181

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 273 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEP 425
           K  I+ +T    +V  +  +LYP++DTP +I++ R   L   Q+ +D  EP
Sbjct: 110 KHHIVCRTCQQSHVKAVCPILYPKKDTPPKILRARRRSLIRAQKKKDFQEP 160


>Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical
           protein C27H6.4b protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 25/93 (26%), Positives = 39/93 (41%)
 Frame = +3

Query: 516 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 695
           K Y+   + ID ++RLAK+  E GN VE         +++    K Y +  W   ++  L
Sbjct: 130 KRYDAGEKSIDVLWRLAKFCNEIGNRVEKDKRK---DIIVE--GKKYATEAWNTDSNNFL 184

Query: 696 VQNWDGALDDLTKLRESSITVEPVPLPATCKPY 794
              W   +    K+ E   T E +     CK Y
Sbjct: 185 AARWAALMSG--KVTEYLGTKEKIEEGKHCKEY 215


>Z81042-4|CAB02796.1|  272|Caenorhabditis elegans Hypothetical
           protein C27H6.4a protein.
          Length = 272

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 25/93 (26%), Positives = 39/93 (41%)
 Frame = +3

Query: 516 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 695
           K Y+   + ID ++RLAK+  E GN VE         +++    K Y +  W   ++  L
Sbjct: 71  KRYDAGEKSIDVLWRLAKFCNEIGNRVEKDKRK---DIIVE--GKKYATEAWNTDSNNFL 125

Query: 696 VQNWDGALDDLTKLRESSITVEPVPLPATCKPY 794
              W   +    K+ E   T E +     CK Y
Sbjct: 126 AARWAALMSG--KVTEYLGTKEKIEEGKHCKEY 156


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -1

Query: 548  IDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYIISLHESQYWLYCILKFLQFRKNYTSPL 369
            ++H + K I   C + V ++    H F  +++++ +  S+Y +  I+  LQ+    TS  
Sbjct: 2727 VEHHDLKRIKSACVQSVRRAVAFSHAFRVWNWLLRMVSSEYSVSDII--LQYLTTLTS-- 2782

Query: 368  YNFFRSVFFRIEHSSDV 318
            YN      F  + +S++
Sbjct: 2783 YNRLAEYMFSAKKNSNI 2799


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 192 LDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTP 356
           L R ++  L EF    +TY   E L+AKLE  +   + +    ++    PE+D+P
Sbjct: 408 LRRPVILRLREFDKDDKTYYDEETLKAKLEEHAVKKLEEEKDKLQSAAAPEDDSP 462


>Z82073-6|CAB04924.1|  333|Caenorhabditis elegans Hypothetical
           protein W06D12.3 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 243 TYDQSELLQAKLEILSKTN-MIDYVTDIRRMLYPEEDTPEEIIQRR 377
           T+ Q        E L+ T  +ID+   I  M+Y  + TPEE+IQR+
Sbjct: 271 TFPQDYRTSEHAEFLNWTRVLIDFGASIG-MVYDRKTTPEEVIQRQ 315


>AF260242-1|AAF97548.1|  333|Caenorhabditis elegans palmitoyl-CoA
           fatty acid desaturaseFAT-5 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 243 TYDQSELLQAKLEILSKTN-MIDYVTDIRRMLYPEEDTPEEIIQRR 377
           T+ Q        E L+ T  +ID+   I  M+Y  + TPEE+IQR+
Sbjct: 271 TFPQDYRTSEHAEFLNWTRVLIDFGASIG-MVYDRKTTPEEVIQRQ 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,013,263
Number of Sequences: 27780
Number of extensions: 435173
Number of successful extensions: 1295
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)