Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_C15
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 122 2e-28
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 28 4.0
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 27 6.9
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 27 6.9
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 27 9.2
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 122 bits (293), Expect = 2e-28
Identities = 62/103 (60%), Positives = 75/103 (72%)
Frame = +2
Query: 53 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 232
+AVGL+KGHK TK + +P+R KG K KFVRD+VREVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 233 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 361
MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 51 VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 29.9 bits (64), Expect = 1.3
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Frame = +2
Query: 59 VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 202
V RKGHK T + G+KGI K R+ +R Q KHS K +R +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168
Query: 203 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 343
+ H+ E KV K K+ ++F K + G ++ + E+ V
Sbjct: 1169 -LEHSSENSSEEEKRKVRK-KKLVEF-KNKHGLDVKKMDESEKRKKV 1212
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 152 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 265
+GL+ K + ++ E GHA Y+K L KVS+++
Sbjct: 32 RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 152 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 331
+GL+ K R ++ E GH Y+K L KVS+ K A + L G H K++
Sbjct: 88 RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145
Query: 332 L 334
L
Sbjct: 146 L 146
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 152 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 325
+GL+ + + ++ E GH Y+K L KVS+ K A + L G + K R
Sbjct: 60 RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 191 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 343
++ E GH Y+K L KVS+ K A + L G H K++ L V
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +2
Query: 254 SKDKRALKFLKRRLGTHIRAKRKREELSN 340
+K RALKFLK RL +R KR E L N
Sbjct: 59 NKSPRALKFLKTRL-QDLRKKRDSETLRN 86
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 137 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 268
RP +L+ ++ + +VR L + G +Y + L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 296 PIVASRTSEHACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 174
P +S A L+ P PS ++ R+ R NHG+TW
Sbjct: 772 PTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812
>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +2
Query: 197 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 331
RE+ + + + E++K+ K K++ K +K++ + K+K+EE
Sbjct: 3 REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47
>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 99 ADILVVLWPFRRPTAISKXRSHDFGLT 19
AD V LW R TA+SK R+H+ +T
Sbjct: 108 ADGRVTLWEPRLGTALSKIRAHEDAVT 134
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 116 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 274
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDL 712
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,324
Number of Sequences: 59808
Number of extensions: 223504
Number of successful extensions: 609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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