Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C13
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   152   4e-38
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   2.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   9.8  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  152 bits (368), Expect = 4e-38
 Identities = 71/173 (41%), Positives = 107/173 (61%), Gaps = 5/173 (2%)
 Frame = +2

Query: 47  RFXLEGXIMELXXXXXXXXXXXXXXXXSLRLXYLLDELNNPLXTLKSIGHQ*Y*RYEYSD 226
           ++   G I+E                 S +L YLLDE+  P  T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 227 F-----NNIEFDSYIIPSNEIKXNEFRLLDVDNRIILPXNNQIRIIITATDVIHS*TIPS 391
           F       + FDSY++P  +++    R L+VDNR++LP + +IR+I+T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 392 LGVKVDANPGRLNQTNFFINRPGIFXGQCSEICGANHSFIPIVIESXSIKNFI 550
           LG+K D  P RLNQ +  I+R G+F GQCSE+CG  HS +PIV++  S+++F+
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGVSLEDFL 241


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 221 SDFNNIEFDSYIIPSNEIKXNEFRLLDVDNRIILPXNNQIRIIITATDVI 370
           +DF+  E + ++  + E K     L+ + N ++ P N +  II    D I
Sbjct: 492 ADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGE-PIIAATQDFI 540


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +2

Query: 212 YEYSDFNNIEFDSYIIPSNEIKXNEFRLLDVDNRIILPXNNQIRIIITATD-VIHS*TIP 388
           Y  S   + E  S +IP+   K NEF  LD      L  NN   + +  TD  I S  +P
Sbjct: 147 YALSPSTSKEGSSILIPTFVSKFNEFLALDSS----LRDNNLATVAVITTDKAIFSLNVP 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,522
Number of Sequences: 5004
Number of extensions: 27464
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)