Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C13
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       202   2e-52
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       202   2e-52
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       147   6e-36
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_41612| Best HMM Match : OstA (HMM E-Value=5.2)                      29   2.5  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  202 bits (492), Expect = 2e-52
 Identities = 91/185 (49%), Positives = 129/185 (69%), Gaps = 2/185 (1%)
 Frame = +2

Query: 2   VRYSIISLFFNKYINRFXLEGXIMELXXXXXXXXXXXXXXXXSLRLXYLLDELNNPLXTL 181
           V + II     K   R+ ++G ++E+                SL+L YL+DE+ +P  T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 182 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKXNEFRLLDVDNRIILPXNNQIRIIIT 355
           K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VDNR+++P N  +R++IT
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165

Query: 356 ATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFXGQCSEICGANHSFIPIVIESXS 535
           A DVIHS  +P+L VK+DA PGRLNQT FFI RPG+F GQCSEICGANHSF+PIVIE+ S
Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVS 225

Query: 536 IKNFI 550
           +  +I
Sbjct: 226 LDKYI 230


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  202 bits (492), Expect = 2e-52
 Identities = 91/185 (49%), Positives = 129/185 (69%), Gaps = 2/185 (1%)
 Frame = +2

Query: 2   VRYSIISLFFNKYINRFXLEGXIMELXXXXXXXXXXXXXXXXSLRLXYLLDELNNPLXTL 181
           V + II     K   R+ ++G ++E+                SL+L YL+DE+ +P  T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 182 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKXNEFRLLDVDNRIILPXNNQIRIIIT 355
           K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VDNR+++P N  +R++IT
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165

Query: 356 ATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFXGQCSEICGANHSFIPIVIESXS 535
           A DVIHS  +P+L VK+DA PGRLNQT FFI RPG+F GQCSEICGANHSF+PIVIE+ S
Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVS 225

Query: 536 IKNFI 550
           +  +I
Sbjct: 226 LDKYI 230


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  147 bits (356), Expect = 6e-36
 Identities = 68/157 (43%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
 Frame = +2

Query: 2   VRYSIISLFFNKYINRFXLEGXIMELXXXXXXXXXXXXXXXXSLRLXYLLDELNNPLXTL 181
           V + II     K   R+ ++G ++E+                SL+L YL+DE+ +P  T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 182 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKXNEFRLLDVDNRIILPXNNQIRIIIT 355
           K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VDNR+++P N  +R++IT
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165

Query: 356 ATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIF 466
           A DVIHS  +P+L VK+DA PGRLNQT FFI +   F
Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 314 YDYLHLIVGIHYXLFHWMGLYMSQIQYY*NLNIHIFSI 201
           YD +H    IHY   H+  ++   IQYY   NIH ++I
Sbjct: 31  YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYNI 64


>SB_41612| Best HMM Match : OstA (HMM E-Value=5.2)
          Length = 442

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +2

Query: 245 DSYIIPSNEIKXNEFRLLDVDNRIILPXNNQIRIIITATDVIHS*TIPSLGVKVDANPGR 424
           D  + P+N+   ++ + LD  N I +  NNQ  ++ T    +H+    S  + VD N   
Sbjct: 362 DQGVYPNNQSVYSDNQSLDTSNHICVNTNNQ--VVNTNNKSVHT----SHDISVDTNNQG 415

Query: 425 LNQTNFFIN 451
           +N  N  +N
Sbjct: 416 VNTDNKGVN 424


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,408
Number of Sequences: 59808
Number of extensions: 169209
Number of successful extensions: 234
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)