Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_C12
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 179 2e-45
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 34 0.14
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33) 29 2.9
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 28 6.8
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8) 28 6.8
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3) 28 9.0
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 28 9.0
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4) 28 9.0
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027) 28 9.0
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 179 bits (435), Expect = 2e-45
Identities = 90/180 (50%), Positives = 120/180 (66%), Gaps = 2/180 (1%)
Frame = +2
Query: 89 RHWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 268
+ WQR+VKTWF+QP R+ RR+ R LRPIVRCPT +Y+TKVRAGRG
Sbjct: 16 KDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPTFKYNTKVRAGRG 75
Query: 269 FTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVL 445
FTL E++AAG+ A TIGIAVD RR+N+S ESLQ NVQR+KEY+++LI+FP K K
Sbjct: 76 FTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPRKANKPK 135
Query: 446 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSI-AKLVGI 622
+G++ + A QL+GP+MP+ Q + ARPITEDEK + + + + KLVG+
Sbjct: 136 QGDSEAADLANAVQLQGPVMPIPQESVPIKARPITEDEKKSASSRQCESSGEVKTKLVGL 195
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 52 KGNNMIPNGHFHK 90
K NN+IPNGHFHK
Sbjct: 4 KRNNIIPNGHFHK 16
>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
Length = 440
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 329 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 487
IA+ R + + + RI+E R ++F GK V G +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353
>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
Length = 665
Score = 29.5 bits (63), Expect = 2.9
Identities = 29/115 (25%), Positives = 47/115 (40%)
Frame = +2
Query: 338 DPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 517
+P + ++ E+ + N ++ +E A + K KKVL E+ ++LR
Sbjct: 462 EPAWKREAREAREANYKKPEEKVAPSVQHLKDKKVLPVLRPEDILSGKSELRKSWREPDV 521
Query: 518 PAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTKAPT 682
PAPK P EDE K + G + + K + E P TK+ T
Sbjct: 522 PAPKKPVPPPPEDEHK-KPSRPSPPLTKKTNAAGSQEELRKSSREEPPLKTKSVT 575
>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 430
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 345 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 220
+GS V ++T NP L++R N +P R +L+W++ G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418
>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
Length = 91
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +2
Query: 314 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 484
AR I +A+ RR + S+Q + EY R KG+KV KG +ERK A+
Sbjct: 17 ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68
>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
Length = 449
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 345 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 199
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 199 SCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKSLPMPC 86
SCRTW SF+ +L AV S+ L+ + S C
Sbjct: 199 SCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWIC 236
>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
Length = 318
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 345 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 199
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 66 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116
>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
Length = 617
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 199 SCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKSLPMPC 86
SCRTW SF+ +L AV S+ L+ + S C
Sbjct: 137 SCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWIC 174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,175,701
Number of Sequences: 59808
Number of extensions: 426126
Number of successful extensions: 1139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -