Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C10
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             438   e-123
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      30   2.0  
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   6.1  
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   6.1  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   8.0  
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      28   8.0  
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   8.0  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  438 bits (1079), Expect = e-123
 Identities = 195/259 (75%), Positives = 228/259 (88%)
 Frame = +1

Query: 40   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 219
            MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425  MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 220  VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 399
            V KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAK
Sbjct: 485  VKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAK 544

Query: 400  YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 579
            YKL +V+RV  G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+
Sbjct: 545  YKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNM 604

Query: 580  CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 759
             M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+
Sbjct: 605  AMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPK 664

Query: 760  GKGIRLTIAEERDKRIAXK 816
            GKG+RL+IAEERD+RIA K
Sbjct: 665  GKGVRLSIAEERDRRIAEK 683


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 370 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 549
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 550 DFIKFESGNLCM 585
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 1/113 (0%)
 Frame = +3

Query: 474 HHPLSRPTYQSQRFHPVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRLL 653
           H+    P+ Q + F       Y   G+HQV +     + G P     G H+V  E     
Sbjct: 132 HNERGSPSTQREGF-----TKYTTRGVHQVHI-----ERGSPKYTTRGGHQVHNERGSPS 181

Query: 654 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 809
                   + T   H+V  +R       EGV    +R GH  H  RG+   HR
Sbjct: 182 TQREGVTKYTTRGGHQVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 480 PLSRPTYQSQRFHPVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPR---ETSRL 650
           PLS  +  S R+HP+  C++  + LH      L + H    +     H  P    ++S L
Sbjct: 102 PLSSSSQSSHRYHPL--CHHHHHHLHH--HHHLCHHHLSLFVCLPTQHYFPAFQVQSSPL 157

Query: 651 LRHCAHQGLHG 683
           L HC H    G
Sbjct: 158 LCHCTHDDFSG 168


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +1

Query: 196 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 363
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 183 EES--SEVCFDRKRSPENCE 236
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 705 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 797
           +Q  H+  G+   H      GH  HHRR +G
Sbjct: 41  DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 706 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAXKV 819
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 706 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAXKV 819
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +3

Query: 612 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 785
           C H H +  +    + H +H  LH TH+  E  +    R G  G      R    PH+R
Sbjct: 18  CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 182 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 30
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR    K
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
 Frame = +3

Query: 477 HPLSRPTYQSQR-FHPVRHCNYED-YGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 650
           H     TY+ +   H  +H  YE+ +G H+        +HG        +       +  
Sbjct: 78  HRQQHVTYEEEHGTHRQQHVTYEEEHGTHRQHHVTYEEEHGTHRQQHVTYEE--EHGTHR 135

Query: 651 LRHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 782
            +H  H+  HGTH +H V  +  H     + V        H  HH
Sbjct: 136 QQHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180


>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -1

Query: 806 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRD 627
           + LSR    + R+P P     ++ +P P   T + +   +CPV  +  TMS  P  + R 
Sbjct: 48  LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFPYPVYR- 101

Query: 626 TMVPTRPKLRPPV-IIHKFPDSNLMKSIIFVV 534
              P    L P   + +  P S +  ++ F++
Sbjct: 102 VHYPLSRVLYPVYRVFYHLPVSFIPYTVSFII 133


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +3

Query: 618 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 788
           HH  P     +LRH  H+  +  H RH      H+R  H   H       H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,145,125
Number of Sequences: 59808
Number of extensions: 691977
Number of successful extensions: 2024
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2010
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)