Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C09
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...   162   5e-41
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    30   0.44 
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    27   3.1  
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   7.2  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   7.2  

>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score =  162 bits (394), Expect = 5e-41
 Identities = 99/239 (41%), Positives = 137/239 (57%), Gaps = 9/239 (3%)
 Frame = +1

Query: 103 LEKVVTALEKFAPKALAXXWXNTGLLVE-PYTPXQITKILLTNDLTEXVALEA-EILACE 276
           L+KVV ++  + PK LA  W NTGLL+E P+     + +LLT DLTE VA EA       
Sbjct: 10  LKKVVESI--YNPK-LADSWDNTGLLLEAPFPRTNASSVLLTIDLTEKVAEEAISNKLVS 66

Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
            I++YHP IF  LK+I     ++R +  L  + I +YSPHT+ D+   GVNDWLA     
Sbjct: 67  SIVAYHPIIFRGLKAITMEDPQQRSLLKLAAEGIHVYSPHTAVDAAVDGVNDWLAQGIAG 126

Query: 457 AES--KPILQSNNPDF-----GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKS 615
             +  K ++ +          G GR+  L     L + V + KELT L +V++    G  
Sbjct: 127 GRNNIKSVVPTQQNSVMAEAEGYGRICELKIPTTLRELVQRAKELTGLQYVQVCAPNG-- 184

Query: 616 MTHSVQRVALCAGSGSSVLKGVDADLYLTGEMLHHDVLDATQKGITVILTNHSDSERGF 792
           +   + +V+LCAGSG SV+   DADLY TGE+ HH VL A  KGI+VIL  HS++ERG+
Sbjct: 185 LDSHISKVSLCAGSGGSVVMNTDADLYFTGELSHHQVLAAMAKGISVILCGHSNTERGY 243


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 430 DWLASAFFVAESKPILQSNNPDFGAGRLLHLSSGIPLSDAVNKIKE 567
           D+L +A F  +  P+LQ   P+ G    LH  + + L D V++ +E
Sbjct: 4   DYLLTAIFDPDRGPVLQYQCPENGEASDLHFLAELMLPDRVHERRE 49


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 663 TSGSGT*RYPLNAVRHRLSLCDSDA 589
           T+GSG   YPL+ +R R+ +   +A
Sbjct: 243 TTGSGVASYPLDTIRRRMMMTSGEA 267


>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +1

Query: 208 TKILLTNDLTEXVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALY 387
           TKI  T++LTE    + E+++ +   S    + AP K       K+R V+ L +  I+L+
Sbjct: 112 TKITDTSELTERERRKQELVSKKAEASRKMEVKAPAKES-----KKRKVNELSQDVISLH 166

Query: 388 SPHTS 402
           SP  S
Sbjct: 167 SPKES 171


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 469 PILQSNNPDFGAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGK--SMTHSV 630
           P+++ + PDF  G    +     L D ++K ++  R     + + +GK   +TH +
Sbjct: 178 PLVRKDKPDFSNGHHDLIKQITELQDMLDKARDQARKKSRTVDILEGKVNELTHQL 233


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 748 YLFELHQGRRDEAFRLSNKDQHRLPLVPNFRIRHITLPSE 629
           Y  E  Q   +E  +L+NK  HRL + P  +   I  P E
Sbjct: 328 YTLEFAQSHLEEVGKLANKYNHRLTMHPG-QYTQIASPRE 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,094
Number of Sequences: 5004
Number of extensions: 59839
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)