Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C09
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45...    29   5.7  
04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911           28   9.9  

>08_01_0065 +
           452383-452629,452733-452868,453049-453118,453237-453330,
           453426-453639,453756-453897,454076-454246,454586-454780
          Length = 422

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 544 DAVNKIKELTRLSHVRIAV-AKGKSMTHSVQRVALCAGSGSSVLKGVDA 687
           DAV KIKE+T    V +AV A GK++T S Q        G +V+ G+ A
Sbjct: 295 DAVEKIKEITDGRGVDVAVEALGKALTFS-QCAKSVRDGGKAVMIGLAA 342


>04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911
          Length = 691

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 207 YLXWCVRFHQ*TSVXPTXCQCFWSK 133
           +  WC R H   ++    C CFWSK
Sbjct: 421 FFGWCSRGHS-WNILRFMCSCFWSK 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,834,401
Number of Sequences: 37544
Number of extensions: 396691
Number of successful extensions: 834
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)