Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C09
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29942| Best HMM Match : NIF3 (HMM E-Value=9.7e-16)                 139   2e-33
SB_44115| Best HMM Match : NIF3 (HMM E-Value=8.7e-06)                 115   5e-26
SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)                  31   0.82 
SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26)                 30   2.5  
SB_28387| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  30   2.5  

>SB_29942| Best HMM Match : NIF3 (HMM E-Value=9.7e-16)
          Length = 200

 Score =  139 bits (337), Expect = 2e-33
 Identities = 68/129 (52%), Positives = 86/129 (66%)
 Frame = +1

Query: 97  VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
           + L++VV+ LE +AP +LA  W N GLLVEP     +  ILLTNDLTE V  EA      
Sbjct: 27  MDLKEVVSNLESWAPTSLAEKWDNVGLLVEPSGQHNVRSILLTNDLTEKVLQEAIEKRAN 86

Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
           MIISYHPPIF PLK +  +S+KER++   +E+RIA+YSPHT++D+V GGVNDWLA     
Sbjct: 87  MIISYHPPIFVPLKRLTSKSFKERIIVKAIEERIAIYSPHTAFDAVFGGVNDWLAKGLGR 146

Query: 457 AESKPILQS 483
               PI  S
Sbjct: 147 GSVDPITYS 155


>SB_44115| Best HMM Match : NIF3 (HMM E-Value=8.7e-06)
          Length = 154

 Score =  115 bits (276), Expect = 5e-26
 Identities = 57/133 (42%), Positives = 85/133 (63%)
 Frame = +1

Query: 394 HTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAGRLLHLSSGIPLSDAVNKIKELT 573
           H S D++   +    +   +  E   + +   P  G+GRL  L + + L D +++IK+  
Sbjct: 13  HCSGDTLSAVMQILQSYTIYYLEIYQLAKKPIPGTGSGRLCTLDTPVTLPDIIHRIKKHL 72

Query: 574 RLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKGVDADLYLTGEMLHHDVLDATQKGIT 753
           +LSH+R+A A  K+    +  VALCAGSG+SVL+GV AD+YLTGEM HH+VL+A  +G+ 
Sbjct: 73  QLSHLRVAYAPSKAKDTLLSTVALCAGSGASVLQGVAADVYLTGEMSHHEVLEAVSRGVH 132

Query: 754 VILTNHSDSERGF 792
           VIL  HS++ERGF
Sbjct: 133 VILCEHSNTERGF 145


>SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)
          Length = 288

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 331 RSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNN 489
           +++ ER +   ++  IA+Y+ HT+ D+ + GVN    +A  +  +K ++   N
Sbjct: 2   KNYVERAILKAIKNDIAIYAIHTALDNHQQGVNKIFCNALGLMNTKILIPKEN 54


>SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26)
          Length = 288

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 759 YNCYTFLSCIKDVVMKHFACQIKISIDSL*YRTSGS 652
           Y   T LSC+ +V+ K  + Q+  S DSL Y  S +
Sbjct: 27  YRSVTILSCVNEVLEKLVSVQLATSFDSLMYVNSSA 62


>SB_28387| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 220

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 759 YNCYTFLSCIKDVVMKHFACQIKISIDSL*YRTSGS 652
           Y   T LSC+ +V+ K  + Q+  S DSL Y  S +
Sbjct: 27  YRSVTILSCVNEVLEKLVSVQLATSFDSLMYVNSSA 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,457,932
Number of Sequences: 59808
Number of extensions: 469640
Number of successful extensions: 932
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)