Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_C09
(797 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007654-1|AAH07654.1| 377|Homo sapiens NIF3L1 protein protein. 130 8e-30
AY251944-1|AAP84064.1| 252|Homo sapiens NIF3L1 isoform gamma pr... 130 8e-30
AY251943-1|AAP84063.1| 285|Homo sapiens NIF3L1 isoform beta pro... 130 8e-30
AK023378-1|BAB14551.1| 350|Homo sapiens protein ( Homo sapiens ... 130 8e-30
AF283538-1|AAG44846.1| 377|Homo sapiens NIF3L1 protein protein. 130 8e-30
AF060513-1|AAG43131.1| 350|Homo sapiens My018 protein protein. 130 8e-30
AC005037-3|AAY14724.1| 377|Homo sapiens unknown protein. 130 8e-30
AB038949-1|BAB32499.1| 350|Homo sapiens amyotrophic lateral scl... 130 8e-30
AF182416-1|AAG14952.1| 351|Homo sapiens MDS015 protein. 120 6e-27
AY338826-1|AAR08421.2| 2590|Homo sapiens DNA polymerase theta pr... 31 4.8
AY032677-1|AAK39635.1| 2724|Homo sapiens DNA polymerase theta pr... 31 4.8
AF052573-1|AAC33565.1| 1762|Homo sapiens DNA polymerase theta pr... 31 4.8
AB209867-1|BAD93104.1| 2214|Homo sapiens DNA polymerase theta va... 31 4.8
>BC007654-1|AAH07654.1| 377|Homo sapiens NIF3L1 protein protein.
Length = 377
Score = 130 bits (313), Expect = 8e-30
Identities = 59/134 (44%), Positives = 83/134 (61%)
Frame = +1
Query: 97 VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
+ L+ ++++L FA + A W N GLLVEP P + + LTNDLTE V E +
Sbjct: 28 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87
Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
+I+SYHPPIF P+K I +WKER+V LE R+ +YSPHT++D+ GVN+WLA
Sbjct: 88 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA 147
Query: 457 AESKPILQSNNPDF 498
S+PI S P++
Sbjct: 148 CTSRPIHPSKAPNY 161
Score = 119 bits (287), Expect = 1e-26
Identities = 55/98 (56%), Positives = 73/98 (74%)
Frame = +1
Query: 499 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 678
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 249 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 308
Query: 679 VDADLYLTGEMLHHDVLDATQKGITVILTNHSDSERGF 792
V+ADLYLTGEM HHD LDA +GI VIL HS++ERGF
Sbjct: 309 VEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGF 346
>AY251944-1|AAP84064.1| 252|Homo sapiens NIF3L1 isoform gamma
protein.
Length = 252
Score = 130 bits (313), Expect = 8e-30
Identities = 59/134 (44%), Positives = 83/134 (61%)
Frame = +1
Query: 97 VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
+ L+ ++++L FA + A W N GLLVEP P + + LTNDLTE V E +
Sbjct: 28 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87
Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
+I+SYHPPIF P+K I +WKER+V LE R+ +YSPHT++D+ GVN+WLA
Sbjct: 88 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA 147
Query: 457 AESKPILQSNNPDF 498
S+PI S P++
Sbjct: 148 CTSRPIHPSKAPNY 161
>AY251943-1|AAP84063.1| 285|Homo sapiens NIF3L1 isoform beta
protein.
Length = 285
Score = 130 bits (313), Expect = 8e-30
Identities = 59/134 (44%), Positives = 83/134 (61%)
Frame = +1
Query: 97 VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
+ L+ ++++L FA + A W N GLLVEP P + + LTNDLTE V E +
Sbjct: 28 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87
Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
+I+SYHPPIF P+K I +WKER+V LE R+ +YSPHT++D+ GVN+WLA
Sbjct: 88 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA 147
Query: 457 AESKPILQSNNPDF 498
S+PI S P++
Sbjct: 148 CTSRPIHPSKAPNY 161
>AK023378-1|BAB14551.1| 350|Homo sapiens protein ( Homo sapiens
cDNA FLJ13316 fis, clone OVARC1001555, weakly similar to
NGG1-INTERACTING FACTOR 3. ).
Length = 350
Score = 130 bits (313), Expect = 8e-30
Identities = 59/134 (44%), Positives = 83/134 (61%)
Frame = +1
Query: 97 VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
+ L+ ++++L FA + A W N GLLVEP P + + LTNDLTE V E +
Sbjct: 1 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 60
Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
+I+SYHPPIF P+K I +WKER+V LE R+ +YSPHT++D+ GVN+WLA
Sbjct: 61 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA 120
Query: 457 AESKPILQSNNPDF 498
S+PI S P++
Sbjct: 121 CTSRPIHPSKAPNY 134
Score = 119 bits (287), Expect = 1e-26
Identities = 55/98 (56%), Positives = 73/98 (74%)
Frame = +1
Query: 499 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 678
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 222 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 281
Query: 679 VDADLYLTGEMLHHDVLDATQKGITVILTNHSDSERGF 792
V+ADLYLTGEM HHD LDA +GI VIL HS++ERGF
Sbjct: 282 VEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGF 319
>AF283538-1|AAG44846.1| 377|Homo sapiens NIF3L1 protein protein.
Length = 377
Score = 130 bits (313), Expect = 8e-30
Identities = 59/134 (44%), Positives = 83/134 (61%)
Frame = +1
Query: 97 VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
+ L+ ++++L FA + A W N GLLVEP P + + LTNDLTE V E +
Sbjct: 28 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87
Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
+I+SYHPPIF P+K I +WKER+V LE R+ +YSPHT++D+ GVN+WLA
Sbjct: 88 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA 147
Query: 457 AESKPILQSNNPDF 498
S+PI S P++
Sbjct: 148 CTSRPIHPSKAPNY 161
Score = 119 bits (287), Expect = 1e-26
Identities = 55/98 (56%), Positives = 73/98 (74%)
Frame = +1
Query: 499 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 678
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 249 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 308
Query: 679 VDADLYLTGEMLHHDVLDATQKGITVILTNHSDSERGF 792
V+ADLYLTGEM HHD LDA +GI VIL HS++ERGF
Sbjct: 309 VEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGF 346
>AF060513-1|AAG43131.1| 350|Homo sapiens My018 protein protein.
Length = 350
Score = 130 bits (313), Expect = 8e-30
Identities = 59/134 (44%), Positives = 83/134 (61%)
Frame = +1
Query: 97 VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
+ L+ ++++L FA + A W N GLLVEP P + + LTNDLTE V E +
Sbjct: 1 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 60
Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
+I+SYHPPIF P+K I +WKER+V LE R+ +YSPHT++D+ GVN+WLA
Sbjct: 61 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA 120
Query: 457 AESKPILQSNNPDF 498
S+PI S P++
Sbjct: 121 CTSRPIHPSKAPNY 134
Score = 119 bits (287), Expect = 1e-26
Identities = 55/98 (56%), Positives = 73/98 (74%)
Frame = +1
Query: 499 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 678
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 222 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 281
Query: 679 VDADLYLTGEMLHHDVLDATQKGITVILTNHSDSERGF 792
V+ADLYLTGEM HHD LDA +GI VIL HS++ERGF
Sbjct: 282 VEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGF 319
>AC005037-3|AAY14724.1| 377|Homo sapiens unknown protein.
Length = 377
Score = 130 bits (313), Expect = 8e-30
Identities = 59/134 (44%), Positives = 83/134 (61%)
Frame = +1
Query: 97 VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
+ L+ ++++L FA + A W N GLLVEP P + + LTNDLTE V E +
Sbjct: 28 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87
Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
+I+SYHPPIF P+K I +WKER+V LE R+ +YSPHT++D+ GVN+WLA
Sbjct: 88 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA 147
Query: 457 AESKPILQSNNPDF 498
S+PI S P++
Sbjct: 148 CTSRPIHPSKAPNY 161
Score = 119 bits (287), Expect = 1e-26
Identities = 55/98 (56%), Positives = 73/98 (74%)
Frame = +1
Query: 499 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 678
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 249 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 308
Query: 679 VDADLYLTGEMLHHDVLDATQKGITVILTNHSDSERGF 792
V+ADLYLTGEM HHD LDA +GI VIL HS++ERGF
Sbjct: 309 VEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGF 346
>AB038949-1|BAB32499.1| 350|Homo sapiens amyotrophic lateral
sclerosis 2 protein.
Length = 350
Score = 130 bits (313), Expect = 8e-30
Identities = 59/134 (44%), Positives = 83/134 (61%)
Frame = +1
Query: 97 VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
+ L+ ++++L FA + A W N GLLVEP P + + LTNDLTE V E +
Sbjct: 1 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 60
Query: 277 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 456
+I+SYHPPIF P+K I +WKER+V LE R+ +YSPHT++D+ GVN+WLA
Sbjct: 61 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA 120
Query: 457 AESKPILQSNNPDF 498
S+PI S P++
Sbjct: 121 CTSRPIHPSKAPNY 134
Score = 119 bits (287), Expect = 1e-26
Identities = 55/98 (56%), Positives = 73/98 (74%)
Frame = +1
Query: 499 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 678
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 222 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 281
Query: 679 VDADLYLTGEMLHHDVLDATQKGITVILTNHSDSERGF 792
V+ADLYLTGEM HHD LDA +GI VIL HS++ERGF
Sbjct: 282 VEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGF 319
>AF182416-1|AAG14952.1| 351|Homo sapiens MDS015 protein.
Length = 351
Score = 120 bits (289), Expect = 6e-27
Identities = 57/135 (42%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Frame = +1
Query: 97 VSLEKVVTALEKFAPKALAXXWXNTGLLVEPYTPXQITKILLTNDLTEXVALEAEILACE 276
+ L+ ++++L FA + A W N GLLVEP P + + LTNDLTE V E +
Sbjct: 1 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 60
Query: 277 MIISYHPPIFAPLKSI-VQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFF 453
+I+SYHPPIF P+K I ++ +ER+V LE R+ +YSPHT++D+ GVN+WLA
Sbjct: 61 LILSYHPPIFRPMKRINLEHMGRERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLG 120
Query: 454 VAESKPILQSNNPDF 498
S+PI S P++
Sbjct: 121 ACTSRPIHPSKAPNY 135
Score = 119 bits (287), Expect = 1e-26
Identities = 55/98 (56%), Positives = 73/98 (74%)
Frame = +1
Query: 499 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 678
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 223 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 282
Query: 679 VDADLYLTGEMLHHDVLDATQKGITVILTNHSDSERGF 792
V+ADLYLTGEM HHD LDA +GI VIL HS++ERGF
Sbjct: 283 VEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGF 320
>AY338826-1|AAR08421.2| 2590|Homo sapiens DNA polymerase theta
protein.
Length = 2590
Score = 31.1 bits (67), Expect = 4.8
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +1
Query: 397 TSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAG----RLLHLSSGIPLSDAVNKIK 564
T W + R G+ + A+A V E++ ILQ + + G LLH SS L+ + +++K
Sbjct: 861 TIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH-SSTCSLTHSESEVK 919
Query: 565 ELTRLSHVRIAVAKGKSMTHS 627
E T +S + + K S S
Sbjct: 920 EHTFISQTKSSYKKLTSKNKS 940
>AY032677-1|AAK39635.1| 2724|Homo sapiens DNA polymerase theta
protein.
Length = 2724
Score = 31.1 bits (67), Expect = 4.8
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +1
Query: 397 TSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAG----RLLHLSSGIPLSDAVNKIK 564
T W + R G+ + A+A V E++ ILQ + + G LLH SS L+ + +++K
Sbjct: 995 TIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH-SSTCSLTHSESEVK 1053
Query: 565 ELTRLSHVRIAVAKGKSMTHS 627
E T +S + + K S S
Sbjct: 1054 EHTFISQTKSSYKKLTSKNKS 1074
>AF052573-1|AAC33565.1| 1762|Homo sapiens DNA polymerase theta
protein.
Length = 1762
Score = 31.1 bits (67), Expect = 4.8
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +1
Query: 397 TSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAG----RLLHLSSGIPLSDAVNKIK 564
T W + R G+ + A+A V E++ ILQ + + G LLH SS L+ + +++K
Sbjct: 33 TIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH-SSTCSLTHSESEVK 91
Query: 565 ELTRLSHVRIAVAKGKSMTHS 627
E T +S + + K S S
Sbjct: 92 EHTFISQTKSSYKKLTSKNKS 112
>AB209867-1|BAD93104.1| 2214|Homo sapiens DNA polymerase theta
variant protein.
Length = 2214
Score = 31.1 bits (67), Expect = 4.8
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +1
Query: 397 TSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAG----RLLHLSSGIPLSDAVNKIK 564
T W + R G+ + A+A V E++ ILQ + + G LLH SS L+ + +++K
Sbjct: 485 TIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH-SSTCSLTHSESEVK 543
Query: 565 ELTRLSHVRIAVAKGKSMTHS 627
E T +S + + K S S
Sbjct: 544 EHTFISQTKSSYKKLTSKNKS 564
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,553,346
Number of Sequences: 237096
Number of extensions: 2127784
Number of successful extensions: 7665
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7664
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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