Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C07
         (393 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   4.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   7.6  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 8   PMMIQYLLLTRNKQHVQQIRRF---LRSIGRVSGRSKP*GSAGTSSAIS 145
           PM +QYL + R   H+ +I  F   +R I R      P  S G SS +S
Sbjct: 168 PMNLQYLPMDRQLCHI-EIESFGYTMRDI-RYKWNEGP-NSVGVSSEVS 213


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 329 SRKAQKSFGEMARNLLFLTNVISCR 255
           S   +K + + ARN  F T   SCR
Sbjct: 366 SESNRKFYFKRARNGTFSTTANSCR 390


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,449
Number of Sequences: 336
Number of extensions: 1128
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8330471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)