Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C06
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    94   2e-20
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    47   4e-06
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    29   0.80 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.6  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   9.9  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
 Frame = +1

Query: 169 IKVGXQLPAADLFEXSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 348
           + VG  LP   L+E  P   V   E  +  K ++  VPGAFTP CS + +PGY+ N  + 
Sbjct: 2   VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57

Query: 349 KSDGVAEIVCVSVNDPYVMAAWGAQHN--TKGKVRMLADPSGNFIKALDLGTNLPP-LGG 519
            + G++ I  V+VND +V  AW    +   +  V  +AD +G F KA D G +    LG 
Sbjct: 58  AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGP 117

Query: 520 FRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 624
            RSKR++ V+ + KV  + +E + T +  S ADK+
Sbjct: 118 LRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 32/106 (30%), Positives = 54/106 (50%)
 Frame = +1

Query: 169 IKVGXQLPAADLFEXSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 348
           I+VG  +P   L +      + + ++TA K +V+FA P A TPGC+K    G+  N  K+
Sbjct: 46  IQVGDVIPDITLPDED-GTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103

Query: 349 KSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKAL 486
           ++    E++ +S +      A+  + N      +L+DP G  IK L
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQNF--PYHLLSDPKGELIKKL 146


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 208 EXSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCV 381
           E    NK  + EL    KV++      +   C K   P Y   AD+L+ DG++  E+ C 
Sbjct: 23  EVPKVNKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCT 81

Query: 382 SVND 393
              D
Sbjct: 82  EEGD 85


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 363 NSIRFQFICVLYVSRQMCFRTSRG 292
           NSI+  F+C++Y+S+ M ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 497 PICRRSEVSAPKGSPWSSL 553
           P+   S+ +APK SPW SL
Sbjct: 612 PVTSGSQTTAPKPSPWKSL 630


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 43  SHRQNFSLLMFLTGSSIXRGITAFANRASARALHI 147
           +HR   +LL  L  S   +G  AF NR  A  L I
Sbjct: 110 THRLRIALLELLKKSGSYKGFEAFVNRTFAVLLRI 144


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +1

Query: 322 GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH-----NTKGKVRMLADPS 465
           GY+ +++ L  +G  + +   V++P   A W  +H     N +  + +L D S
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKDGS 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,121
Number of Sequences: 5004
Number of extensions: 66804
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)