Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_C06
(825 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44) 109 4e-24
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 8e-16
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4) 30 2.6
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004) 29 6.1
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5) 28 8.0
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6) 28 8.0
>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
Length = 246
Score = 109 bits (261), Expect = 4e-24
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 4/157 (2%)
Frame = +1
Query: 160 MAPIKVGXQLPAADLFEXSPAN---KVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYV 330
M P + G ++P +F N KV+ L AGK VVLFA+PGAFTP CS THLP Y
Sbjct: 1 MLPNREGQKVPKV-VFPVREGNDWVKVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYN 59
Query: 331 QNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPP 510
+ A K+ GV +I+C+SVND +VM +W A + + + D +G F + + + +
Sbjct: 60 ELAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGNGEFSEGMGMLVDKSD 118
Query: 511 LG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLAD 618
LG G RS R+SM++ D ++ + +EPD G ++D
Sbjct: 119 LGFGKRSWRYSMLVKDGVIEKMFIEPDVPGDPFKVSD 155
>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 81.4 bits (192), Expect = 8e-16
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +1
Query: 346 LKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPP-LGGF 522
+KS GV + C++VNDP+VM+AWG + +GK A+DL + P LG
Sbjct: 53 IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK-------------AVDLELDATPFLGNI 99
Query: 523 RSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 624
RSKR++M++ D V+ L+VEPDGTGL+CSL++ I
Sbjct: 100 RSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133
>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
Length = 366
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 286 AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 390
A PG S+ L + + A +KSD +A+ IVCV +N
Sbjct: 84 ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 29.5 bits (63), Expect = 3.5
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Frame = -1
Query: 711 VTNEVKIALISFLCYLILQCDITHCLLHFDLIGERTRQASAIGLHIQI-LNLAVND---D 544
+T E++ ALI F + C L L R + + + + L+++V D
Sbjct: 166 LTREIQRALIMFPSVRYPSVRVFICRLSVRL---SVRLTACLSVRVSFCLSISVFDCMTK 222
Query: 543 HGEPFGAETSERRQIGAQVQSLD--EVAAGIG*HTHLSFGVVL-SSPSRHHIRVINRHAH 373
G +GAET+ G + L+ V I F ++L SSPS++H ++ H
Sbjct: 223 EGPDYGAETTGYAVRGEGLSCLEGPTVIVIIIFWLRAYFSIILTSSPSKYHRHLVPSPFH 282
Query: 372 YFSNSIRFQFICVLYVS 322
+ ++ F +I ++ +S
Sbjct: 283 HDNSLHHFPYISIINIS 299
>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 475 IKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDL 573
++A+DL TN+ +G R+ F + VD +V+D+
Sbjct: 80 VRAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDI 112
>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
Length = 969
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 421 QHNTKGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQ 567
QHNT+ K+ ++A+ + + + G + L KR+S +VDSK +
Sbjct: 908 QHNTRVKLPVVAERTAGYDDDEESGEDEDVLSRNAIKRYSQQLVDSKTK 956
>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
Length = 325
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 3 FXSLSQNQSSVRSLPSSKLLPSHVSHRVFDXPWHYRIRQSSVSTXTS 143
F SLS + SS +SL ++ P H + P+HY SS + +S
Sbjct: 235 FYSLSSSSSS-QSLSTTLATPCHYHYHHHPSPYHYHYPPSSSLSSSS 280
>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
Length = 178
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 352 ISVYLRSVRIPANVF*NIPG*RRPAPQII 266
+SVY S +P VF +PG R P P ++
Sbjct: 24 LSVYKASELLPRTVFIRVPGGRCPCPHLL 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,206,170
Number of Sequences: 59808
Number of extensions: 545008
Number of successful extensions: 1198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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