Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C06
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical ...    28   9.3  
AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    28   9.3  
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    28   9.3  

>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 356 SDFSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVN 243
           +DF   A C+   K   EH G + P     T F PA N
Sbjct: 113 ADFVTDAACSLVRKFGHEHYGTRTPDNRELTAFHPATN 150


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 401 TYGSLTDTHTISATPSDFSLSAFCTYPGKC 312
           T GS++ T  + +   D S    CT+PG C
Sbjct: 17  TIGSISGTKDVKSKNCDGSAGLTCTFPGDC 46


>AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical
           protein H14E04.3 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 375 HYFSNSIRFQFICVLYVSRQMCFRTSRGEGARHRK 271
           H+F+  I   FICV  VS +   RT+R  G +++K
Sbjct: 129 HFFNIPISLYFICVFLVSSKTHKRTTR-SGRKNKK 162


>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +1

Query: 214 SPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAE--IVCVSV 387
           +P NK+ + +LT+     L A PG+   G    HL   + N   + +    E  I C+  
Sbjct: 140 TPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLKF 196

Query: 388 NDPYVMAAWGAQHNTKGKV-RMLADPSGN 471
           N    M A     +TKG V R+ + P+G+
Sbjct: 197 NQEGNMIATA---STKGTVIRVYSVPNGH 222


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +1

Query: 214 SPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAE--IVCVSV 387
           +P NK+ + +LT+     L A PG+   G    HL   + N   + +    E  I C+  
Sbjct: 140 TPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLKF 196

Query: 388 NDPYVMAAWGAQHNTKGKV-RMLADPSGN 471
           N    M A     +TKG V R+ + P+G+
Sbjct: 197 NQEGNMIATA---STKGTVIRVYSVPNGH 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,514,570
Number of Sequences: 27780
Number of extensions: 400679
Number of successful extensions: 1003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)