Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C06
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 413 QAAITYGSLTDTHTISATPSDFSLSAF 333
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 413 QAAITYGSLTDTHTISATPSDFSLSAF 333
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 413 QAAITYGSLTDTHTISATPSDFSLSAF 333
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 262 QTAITYVWKNDEGTLRKSPSLTSLNAY 288


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 413 QAAITYGSLTDTHTISATPSDFSLSAF 333
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 52  DDGSDLTDD*FCESE 8
           DDG D+ DD  CE E
Sbjct: 345 DDGIDILDDVKCEDE 359


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 459 SQRQLHQGSGPGHQSAAARRFPLQKVLHGHR*QQ 560
           SQ   H+GS P HQ       P     H H   Q
Sbjct: 324 SQYHPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQ 357


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -2

Query: 350 FSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFP 252
           +  S   T+ G C+   PG+       + T+FP
Sbjct: 87  YQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFP 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,310
Number of Sequences: 438
Number of extensions: 4589
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)