Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C04
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    30   1.6  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     29   2.8  
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726...    29   3.7  
03_02_0271 + 7029410-7029949,7030054-7030566                           29   4.8  
08_01_0825 + 8004693-8004698,8005365-8005466,8005830-8005877,800...    28   8.5  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    28   8.5  

>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 365 PNERRTLLRIPEECSGGCSSQRSMEHPRR 451
           P+E RT  R P E SGG  S+RS E P +
Sbjct: 76  PSEGRTEDREPGEVSGGSGSERSGERPMK 104


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 238 RTDRSGWCVQTLLSWCAAYHRG 173
           R + + W ++ L  WCAA HRG
Sbjct: 186 RVETTRWSLEQLNRWCAALHRG 207


>01_05_0344 +
           21172101-21172233,21172332-21172402,21172492-21172653,
           21172995-21173100,21174242-21174439,21174565-21174631,
           21174868-21175051,21175145-21175324,21175408-21175587,
           21176472-21176627,21177487-21178067,21178535-21178640,
           21179152-21179331,21179620-21179892
          Length = 858

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +3

Query: 255 RHEAHERRAQQEDFKHQTLDGLLINKQLWLAE-GLLSCQTKGGRYCGYPRSVRVDARLRD 431
           R E   + AQ   F  +    ++I KQ       L+ C   G RY GY    R +A    
Sbjct: 203 RKETMGKCAQLAQFDEELYKAIIIVKQSGNDTFSLIKCNFSGMRYAGYSTCFRKEAGSHG 262

Query: 432 RWNIQGVFYSHK 467
           R +  G+F  H+
Sbjct: 263 R-DTAGIFRVHQ 273


>03_02_0271 + 7029410-7029949,7030054-7030566
          Length = 350

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 231 SVRAFEKDRHEAHERRAQQEDFKH-QTLDGLLINKQLWLAEGLLSCQTKG 377
           SV    K R E  E RA +E+           + ++LW   GLL+ QT G
Sbjct: 201 SVVEVRKKREEEEELRAMEEEKAGIDAAAAAQVRRELWCGLGLLAAQTLG 250


>08_01_0825 +
           8004693-8004698,8005365-8005466,8005830-8005877,
           8007515-8008003
          Length = 214

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 402 SVRVDARLRDR-WNIQGVFYSHKISTSPTHRGC-DLERDNATNEPSSKSVYFGRNTVPVS 575
           SVR  AR  DR   ++G  Y   +ST     G  +L    A+  P++ +V     T PV 
Sbjct: 111 SVRAQARRADRDLGVEGEAYL--LSTEAGGEGAVNLAGAKASRRPAAVAVADAAETTPVG 168

Query: 576 DLE*WAREPGTA 611
               WA E  +A
Sbjct: 169 PRSSWASEGASA 180


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 142 NFDHDKHIFTGHGGKQR--TKKEASEHTNH 225
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,940,296
Number of Sequences: 37544
Number of extensions: 362141
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)