Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C03
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   1.2  
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    25   4.8  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   6.4  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   6.4  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   8.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   8.4  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   8.4  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.4  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 174 RKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASANITQGGIGFTFVNLRMKSERGNK 353
           R+ V NL   L   PST   S Q + + D+TH+  S   +   +G + +   + + + + 
Sbjct: 363 RRSVPNLISSLGTSPSTF--SSQFLKSTDRTHSFTSKLQSFNPVGTSLLASSLGTSQEDS 420

Query: 354 LNYDV 368
           +NYD+
Sbjct: 421 VNYDI 425


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 228 GKSIQGILAYDKTHTTASANITQGGIGFTFV 320
           G  I GI  Y + HT A  +   G  GF FV
Sbjct: 63  GLPIMGIDVYTQEHTKAWGSKIAGADGFVFV 93


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +3

Query: 255 YDKTHTTASANITQGGIGFTFVNLRMKSERGNKLNYDVYIYV*ILFEQSIN 407
           Y K +T       Q  IG    N+    E G   + D+YI   +L E S N
Sbjct: 584 YSKAYTCYKIAYEQSSIGMGLWNMAYMHEYGIGRDQDIYIARRLLDELSSN 634


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 103 YSSVPISIDLWSTITTLSTTPNYSAKGLRTFITFYP 210
           Y+   ++  +WS  +   +TP  SA     F T YP
Sbjct: 116 YTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYP 151


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 141 HHNAKYDAKLFRKRVENLHYVLPQVPSTIGKS 236
           +HNA     +FR   + + Y+ P+  + +G++
Sbjct: 349 YHNAIVRVNIFRDHRQTIQYISPEDSNVLGQA 380


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 112 VPISIDLWSTITTLSTTPN 168
           +P+SIDLW  +  L T  N
Sbjct: 400 IPMSIDLWLALARLETYEN 418


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 234 SIQGILAYDKTHTTASANITQGGIGFTFVNLR 329
           SI+GI  YD     A  + T GGIG    N+R
Sbjct: 227 SIEGI--YDTLKMCAMISKTAGGIGINIHNIR 256


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 74  RCGDRRMRSPIRRYQYQ*TYGLPSQR 151
           +C  RR  S    Y Y+ TYG P +R
Sbjct: 25  KCDQRRPCSNCIAYNYECTYGQPFKR 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,782
Number of Sequences: 5004
Number of extensions: 33928
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)