Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_C03
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 29 2.8
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 3.7
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 28 3.7
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 28 3.7
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767... 28 4.8
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209... 27 6.4
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 27 6.4
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 27 6.4
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 27 8.5
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 220 PPLASPFREFWPMIRLTPPLPLTSLKVESGSLSSISV*RANAETSLIT 363
PP +PF ++P +PP P S +S+IS A T L+T
Sbjct: 140 PPPPNPFLPYFPFYYYSPPPPFYSSGSSVAGVSAISSAAAATFTLLLT 187
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 188 EPSLRSTPGAIHHWQVHSGNS 250
EP++R PG W HSG+S
Sbjct: 138 EPTIRGIPGQEARWMTHSGSS 158
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 94 AVTYSSVPISIDLWS-TITTLSTTPNYSAKGLRTFI 198
+ T S+ P WS ++TT+ +TPNY K F+
Sbjct: 635 STTASACPDHRTAWSLSLTTIDSTPNYRGKSCVVFV 670
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 81 VIVECGHLFVGTNINRPMVYHHNAKYDAK 167
V V CG L TN + P+ Y+ A YD K
Sbjct: 789 VTVPCGKLVPSTNKDGPLEYNEYAVYDPK 817
>11_02_0042 -
7672565-7672729,7672902-7672977,7673409-7674132,
7674684-7674708,7675041-7675486,7676643-7676862,
7677609-7678459,7678697-7679555
Length = 1121
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +3
Query: 45 NCKSLY*SSPAVVIVECGHLFVGTNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPST 224
+C ++ + P +EC F G IN V N RK + + +++ +P++
Sbjct: 394 SCVAIGENKPCGACMECTDFFTGNGINLIEVDASN--------RKSINRIRHLIENIPAS 445
Query: 225 IGKSIQGILAYDKTHTTAS 281
S + D+ H +S
Sbjct: 446 ATSSRYKVFVVDECHMVSS 464
>10_08_1059 +
22618999-22619206,22620386-22620416,22620440-22620974,
22621065-22621319
Length = 342
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -3
Query: 273 WCESYHRPEFPEWTCQWWMAPGVERNEGSQPFCGII 166
W + + R F W ++AP + GS F G +
Sbjct: 176 WAQDHFRTTFVVWIVGMFLAPKMSHKSGSNDFWGAL 211
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 217 HPPLASPFREFWPMIRLTPPLPLTSLKV 300
HP + + R FWP LT L L L V
Sbjct: 320 HPVVTALLRSFWPQFLLTAMLGLAHLSV 347
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 144 HNAKYDAKLFRKRVENLHYVL 206
HNAK+ +++RK E HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = +3
Query: 111 GTNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASANI 290
GT+ N+ ++ D KR+ ++HY+ +PS + + DK H +
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGMDKNHPFGIGQM 301
Query: 291 TQG 299
G
Sbjct: 302 ENG 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,020,432
Number of Sequences: 37544
Number of extensions: 222642
Number of successful extensions: 537
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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