Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C03
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)               33   0.17 
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)                29   2.2  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
          Length = 906

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 267 ESYHRPEFPEWTCQWWMAPGVERN 196
           +  HR EFP  TC +W+ P  ERN
Sbjct: 106 DGLHRREFPVTTCIFWLIPPTERN 129


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 66   SSPAVVIVECGHLFVGTNINRPMVYHHNAKYDAKLFRKRVENLHY 200
            ++P  +  E GH+ V       +++ H AKYDA+L R      HY
Sbjct: 970  NTPMQIAAENGHVSV-----MKILHRHGAKYDARLLRSATAGGHY 1009


>SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)
          Length = 654

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 246 FPEWTCQWWMAPGVERNEGSQPFC 175
           F + +C+ WM   V  N+ S+PFC
Sbjct: 383 FAKESCRTWMQSHVAHNKSSEPFC 406


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 205 YPRCHPPLASPFREFWPMIRLTPPLPL 285
           +PR HPP + P     P+++   PLP+
Sbjct: 737 FPRMHPPASGPPLRCTPLLQEVQPLPM 763


>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 91  NAVTYSSVPISIDLWSTITTLSTTPNYSAKGLRTFITFYPRCHPPL 228
           N    S V +  D W  + T++T    +  G RTF  F+ +  PP+
Sbjct: 387 NKTRESLVDVITDHWIVVPTVTTLRACAKAGARTFFYFFEK-KPPV 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,458
Number of Sequences: 59808
Number of extensions: 251406
Number of successful extensions: 477
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)