Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_C03
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical pr...    31   0.62 
AL032644-3|CAA21668.1|  215|Caenorhabditis elegans Hypothetical ...    29   2.5  
U80453-4|AAK31441.2|  674|Caenorhabditis elegans Trehalase prote...    27   5.8  
AJ512339-1|CAD54512.1|  674|Caenorhabditis elegans trehalase pro...    27   5.8  
Z77660-2|CAB01176.1|  361|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical
           protein C27F2.4 protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +3

Query: 81  VIVECGHLFVGTNINRPMV 137
           VI++ GH+FVG +++RPM+
Sbjct: 70  VILDAGHMFVGVDVSRPML 88


>AL032644-3|CAA21668.1|  215|Caenorhabditis elegans Hypothetical
           protein Y51H1A.3b protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 70  RPLW*S*NAVTYSSVPISIDLWSTITTLSTTPNYSAKGLRTFITFYPRCHPPLASPFRE 246
           R +W     V++S++   I L ++        ++  +G  TF  +YPR H P A P  E
Sbjct: 5   RSIWQESCPVSFSALKKWIFLPNSTKIKEKRSSFPVRGPLTFDGWYPRDHKPSAPPTNE 63


>U80453-4|AAK31441.2|  674|Caenorhabditis elegans Trehalase protein
           5 protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 106 SSVPISIDLWSTITTLSTTPNYSAKGLRTFITFY 207
           SS  + ID+ +TITT S++  +    + T IT +
Sbjct: 636 SSTSLPIDITTTITTSSSSSTFGYSNILTLITVF 669


>AJ512339-1|CAD54512.1|  674|Caenorhabditis elegans trehalase
           protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 106 SSVPISIDLWSTITTLSTTPNYSAKGLRTFITFY 207
           SS  + ID+ +TITT S++  +    + T IT +
Sbjct: 636 SSTSLPIDITTTITTSSSSSTFGYSNILTLITVF 669


>Z77660-2|CAB01176.1|  361|Caenorhabditis elegans Hypothetical
           protein F38H4.2 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 183 VENLHYVLPQVPSTIGKSIQGILAYDKTHTTASAN 287
           ++N +Y+ P +PST   ++  +L  + +H T + N
Sbjct: 214 IQNFNYLNPNLPSTGKMTLNELLLINSSHITLTFN 248


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 84   IVECGHLFVGTNINRPMVYHHNAKYDAKLFRKR 182
            ++E G L V  ++ + M Y +   +  K+FRK+
Sbjct: 2287 VIEIGRLMVEEDVRKWMEYQYEMTFVKKMFRKK 2319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,486,169
Number of Sequences: 27780
Number of extensions: 189886
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)