Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_C02
(849 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 341 3e-94
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 336 1e-92
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 305 2e-83
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 305 2e-83
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 305 2e-83
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 30 2.4
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 29 3.2
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 29 3.2
Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 4.2
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 4.2
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 5.5
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 5.5
AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical ... 29 5.5
AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical ... 29 5.5
AL132952-11|CAB61148.1| 136|Caenorhabditis elegans Hypothetical... 28 7.3
AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical ... 28 7.3
Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 28 9.6
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 9.6
AL117193-9|CAB60302.2| 737|Caenorhabditis elegans Hypothetical ... 28 9.6
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 341 bits (839), Expect = 3e-94
Identities = 163/239 (68%), Positives = 193/239 (80%)
Frame = +3
Query: 102 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 281
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 282 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 461
QLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+
Sbjct: 61 QLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTI 120
Query: 462 DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQS 641
E TTQGLDDL RCAQYKKDG FAKWRCV KI TPS A++E A+ LARYASICQ
Sbjct: 121 GEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALKEIASNLARYASICQQ 180
Query: 642 QRIVSIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 818
+V IVEPE+LPDGEH L R QK+TE VL+ VY ALN+HHV+LEGTLLKPNMVT+GQS
Sbjct: 181 NGLVPIVEPEILPDGEHCLARGQKITETVLSYVYHALNEHHVFLEGTLLKPNMVTSGQS 239
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 336 bits (826), Expect = 1e-92
Identities = 162/240 (67%), Positives = 193/240 (80%), Gaps = 1/240 (0%)
Frame = +3
Query: 102 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 281
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 282 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 461
QLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+
Sbjct: 61 QLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTI 120
Query: 462 DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENA-NVLARYASICQ 638
E TTQGLDDL RCAQYKKDG FAKWRCV KI TPS A++E A N+ +RYASICQ
Sbjct: 121 GEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALKEIASNLGSRYASICQ 180
Query: 639 SQRIVSIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 818
+V IVEPE+LPDGEH L R QK+TE VL+ VY ALN+HHV+LEGTLLKPNMVT+GQS
Sbjct: 181 QNGLVPIVEPEILPDGEHCLARGQKITETVLSYVYHALNEHHVFLEGTLLKPNMVTSGQS 240
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 305 bits (750), Expect = 2e-83
Identities = 154/231 (66%), Positives = 179/231 (77%)
Frame = +3
Query: 126 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 305
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 306 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 485
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 486 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVSIVE 665
D LA+R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASICQ+ +V IVE
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASICQANGLVPIVE 191
Query: 666 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 818
PEVL DGEHDL RAQKVTE VLA VYKAL DHHVYLEGTLLKPNMVT GQS
Sbjct: 192 PEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVYLEGTLLKPNMVTPGQS 242
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 305 bits (750), Expect = 2e-83
Identities = 154/231 (66%), Positives = 179/231 (77%)
Frame = +3
Query: 126 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 305
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 306 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 485
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 486 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVSIVE 665
D LA+R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASICQ+ +V IVE
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASICQANGLVPIVE 191
Query: 666 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 818
PEVL DGEHDL RAQKVTE VLA VYKAL DHHVYLEGTLLKPNMVT GQS
Sbjct: 192 PEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVYLEGTLLKPNMVTPGQS 242
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 305 bits (750), Expect = 2e-83
Identities = 154/231 (66%), Positives = 179/231 (77%)
Frame = +3
Query: 126 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 305
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 306 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 485
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 486 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVSIVE 665
D LA+R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASICQ+ +V IVE
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASICQANGLVPIVE 191
Query: 666 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 818
PEVL DGEHDL RAQKVTE VLA VYKAL DHHVYLEGTLLKPNMVT GQS
Sbjct: 192 PEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVYLEGTLLKPNMVTPGQS 242
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 774 RGTRGGRSAPCTRRPERPQSPSGRGPGRARHQVRLRARQSTRCAGSDRWRRSGRA 610
R RS +R R +SP+ R +RH+ R + R +R R R SGR+
Sbjct: 177 RSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSGRS 231
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 774 RGTRGGRSAPCTRRPERPQSPSGRGPGRARHQVRLRARQSTRCAGSDRWRRSGRA 610
R RS +R R +SP+ R +RH+ R + R +R R R SGR+
Sbjct: 177 RSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSGRS 231
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/51 (39%), Positives = 22/51 (43%)
Frame = -1
Query: 771 GTRGGRSAPCTRRPERPQSPSGRGPGRARHQVRLRARQSTRCAGSDRWRRS 619
G RS RR P SP R G + LR RQS+ S R RRS
Sbjct: 445 GRHDSRSVSPVRRRRSP-SPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRS 494
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/51 (39%), Positives = 22/51 (43%)
Frame = -1
Query: 771 GTRGGRSAPCTRRPERPQSPSGRGPGRARHQVRLRARQSTRCAGSDRWRRS 619
G RS RR P SP R G + LR RQS+ S R RRS
Sbjct: 445 GRHDSRSVSPVRRRRSP-SPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRS 494
>Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical
protein F08H9.2 protein.
Length = 130
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 756 RSAPCTRRPERPQSPSGRGPGRARHQVRLRARQSTRCAGSDRWR-RSGR 613
R+ TRR ++PS R+R + R R+R +R S R R RS R
Sbjct: 47 RTNSLTRRRSSTKAPSSARQSRSRSRSRSRSRSKSRSTSSRRSRSRSAR 95
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 786 GVSPRGTRGGRSAPCTRRPERPQSPSGRG--PGRARHQ 679
G P G G R P PE PQ P+GR PG++ Q
Sbjct: 256 GERPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQ 293
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 786 GVSPRGTRGGRSAPCTRRPERPQSPSGRG--PGRARHQ 679
G P G G R P PE PQ P+GR PG++ Q
Sbjct: 256 GERPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQ 293
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +3
Query: 132 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 275
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 747 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 806
Query: 276 YRQLLFSSDA 305
Y QL+ SD+
Sbjct: 807 YEQLVSESDS 816
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +3
Query: 132 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 275
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 276 YRQLLFSSDA 305
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +3
Query: 132 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 275
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 276 YRQLLFSSDA 305
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical
protein C08G5.1 protein.
Length = 882
Score = 28.7 bits (61), Expect = 5.5
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 4/160 (2%)
Frame = +3
Query: 243 GVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGI 422
G+EN+E + + V+ G+ + + QK D L K +I GI
Sbjct: 582 GIENSENTKTESFASIAKDSQVVGMATRGITIMEQMASQKVD-------LKPLKVLIAGI 634
Query: 423 KVD-KGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKW-RCV--LKIGRNTPSYQA 590
KV+ K V P ED + L L + KK+ F K + V K+ + +QA
Sbjct: 635 KVEMKNVDP----EDAKNLKSLYGLESELNRIKKEAGTFMKTVKPVNSTKLSDYSEIFQA 690
Query: 591 IQENANVLARYASICQSQRIVSIVEPEVLPDGEHDLDRAQ 710
++ V ++I S I+ I P L +AQ
Sbjct: 691 VKSVKGVSMNLSAIIGSVEILKIRLPSRTRRAASGLTKAQ 730
>AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical
protein R02F11.2 protein.
Length = 721
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 567 GRSSARNATWRSGSRPSCTGRSAGR---GRPDPGWCIRL 460
GR N G RPS +G AG RP GWC+++
Sbjct: 253 GRPRPGNGGGGGGVRPSNSGCDAGWRRFNRPSGGWCVKV 291
>AL132952-11|CAB61148.1| 136|Caenorhabditis elegans Hypothetical
protein Y51H4A.16 protein.
Length = 136
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +3
Query: 420 IKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQE 599
++V + V L + E T + L LAQ+ ++ +D W+C+ G +T + ++I+E
Sbjct: 22 VRVVERAVALHKNSKEKTNEKL--LAQKSGKWARDAESRNTWKCIRAPGAHTHTGESIKE 79
Query: 600 N 602
+
Sbjct: 80 S 80
>AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical
protein Y41D4A.8 protein.
Length = 347
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 369 DGTPLVSLLEKKGII--PGIKVDKGVVPLFGSEDECT 473
D +PLVS+L G+I P + + VPLF ED CT
Sbjct: 10 DPSPLVSVL---GLIKSPDLMIGSTEVPLFEEEDMCT 43
>Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical
protein T26E3.1 protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 549 NATWRSGSRPSCTGRSAGR---GRPDPGWCIRL 460
N G RP+ G AG RP+ GWC+R+
Sbjct: 48 NGNGNGGGRPTNGGCDAGWRRFNRPNGGWCVRV 80
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 819 TTDRPSPCWA*GVSPRGTRGGRSAPCTRRPERPQSPSGRGPGRAR 685
TT +P V PR T ++AP ++ P R P+ P R
Sbjct: 338 TTRSATPATRTAVPPRATAPPKAAPASKAPTRAPIPARSAPAPPR 382
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 523 SFLYWAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSRETRGVPSSA 362
S L +Q +S P VV SSS +S T ST+ P +S + PS++
Sbjct: 450 STLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTS 503
>AL117193-9|CAB60302.2| 737|Caenorhabditis elegans Hypothetical
protein Y105C5A.15 protein.
Length = 737
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 565 AATPPRTKLSRKTLMCSPATPPSVRASASCRLSSP 669
A P + L+R+TL C+PA P + A C SP
Sbjct: 682 AQFPTLSSLARRTL-CTPAIAPKTQFDARCASVSP 715
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,156,724
Number of Sequences: 27780
Number of extensions: 469260
Number of successful extensions: 1653
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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