Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B24
         (874 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           27   0.19 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 178 WEQYYQPHHNRSVRKNNQREKRKRASIETAGLQSRNAK 291
           W      + N   RKNN  + R   S    G  SRN+K
Sbjct: 376 WHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGETSRNSK 413



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 117 NSPNQNTNNTES 152
           N+PN N NNT S
Sbjct: 391 NNPNDNRNNTSS 402


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +3

Query: 699 DWQINKTAYLWKDESNFLLSTKFLDWFKSV 788
           D ++NKT  +W   ++ +   ++ +++KS+
Sbjct: 276 DEELNKTKPIWTRNADDISQEEYGEFYKSL 305


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 463 HTTTDIRARYIMPGVTTTMCV*TNPMN 543
           +T  D+ ARY+ P ++ T  +   P N
Sbjct: 15  NTPKDMNARYLPPSLSDTRPMLPYPQN 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,983
Number of Sequences: 336
Number of extensions: 4192
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)