Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_B24
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 28 1.5
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 28 1.5
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 28 2.0
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 28 2.0
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 3.5
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 4.6
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 26 6.1
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 6.1
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 6.1
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 26 8.1
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 26 8.1
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.1
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 8.1
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -3
Query: 650 LNIAGMSGFKFYIALVSIICFLVEAKRHTYFDNHVEFIGFVYTHIVVVTPGMM 492
LN + +KF I +V ++CF + + +FD H++F + H+ +V G +
Sbjct: 274 LNASFDGSYKFPIPIV-LLCFFLYSLLTPFFDIHLQF-QLIVMHMSIVQVGFI 324
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 89 INXYSITDNVIIYHYS--PNHLNFWSKS 12
+N Y +T V++Y+YS N+ +FW +S
Sbjct: 1 MNSYVLTSQVLVYNYSKRKNYWHFWLRS 28
>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 441 KKMKEIDPYYNRYSSTVHHAGSHYDNVRINKPDEFDMV 554
+K KEID Y+R S + A Y N + P E M+
Sbjct: 36 QKQKEIDENYHRQESLIESAKIAYLNTKNTPPKEDSML 73
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 330 TNLESLLADISVRYIQLKESDXELHYKVLDTIFQNLHKKMKEIDPYY 470
T +S + SV + ++KES ++ Y++ F+N ++ KEI +Y
Sbjct: 557 TKAKSAVETGSVPWSKIKESTSDIFYELTSMKFENPNEGEKEIVEHY 603
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 645 VQLKMGPQFQNLPM--RDGVDWQINKTAYLWKDESNFLLSTKFLDWFK 782
+ L +F P+ + VD++I T YL+ + L FLDW +
Sbjct: 317 ITLSSSIEFTEFPLGFNENVDFEILGTVYLFLRTPSILNRLNFLDWHR 364
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 333 NLESLLADISVRYIQLKESDXELHYKVLDTIFQNLHKKMKEIDPYYNRYSSTVHH 497
NL+ +AD+S + ++L+ +LH +L+ + NL + + D N+ S H
Sbjct: 460 NLQREIADLSEQIVELESKRNDLHSALLE-MGGNLTSLLTKKDSIANKISDQSEH 513
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 140 IRILIWAIHFALKIFQIINXYSITD 66
+ +L+W +F ++F I+ YS+ D
Sbjct: 41 VSLLVWNFYFGYRVFYRISKYSLID 65
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/42 (21%), Positives = 23/42 (54%)
Frame = -3
Query: 611 ALVSIICFLVEAKRHTYFDNHVEFIGFVYTHIVVVTPGMMYR 486
AL+S++ ++ +R + +H + + HI++ ++YR
Sbjct: 319 ALLSLLSYINTHQRQSERSHHFSILSLILFHIIIDDRSLLYR 360
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 172 TFWEQYYQPHHNRSVRKNNQREKRKRASIETAGLQSRNAKKGLA 303
T E ++ H N SVR++N R + S++ L+S G A
Sbjct: 840 TILESNFRNHSNPSVRRSNLRVGKTVESVQNTKLKSVENDSGKA 883
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 261 NSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDXELHYKVLDTIFQNLH 440
+S P+S+ E S P+IT+L R +L ++ H L +F N+H
Sbjct: 91 SSSVPQSRTSELSSTNSIPTPRITSLNPEELSRRERAQRLLQTYNSFHGSGLGGLFPNIH 150
Query: 441 KKMK 452
++++
Sbjct: 151 RELE 154
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 117 NSPNQNTNNTESLLRSIIN 173
N+PN + N ++LRSIIN
Sbjct: 400 NAPNYDLTNAHAVLRSIIN 418
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 447 MKEIDPYYNRYSSTVHHAGSHYDNVRINKPDE 542
+KE+ P+++ S+ + G D+ I+K DE
Sbjct: 96 LKELKPFHSTLSAFTNETGGIIDDTIISKQDE 127
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 178 WEQYYQPHHNRSVRKNNQREKRKRASIETAGLQSRNAK 291
WE+ Q + SV KN+ KRKR + L + K
Sbjct: 27 WERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRK 64
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +3
Query: 348 LADISVRYIQLKESDXELHYKVLDTIFQNLHKKMKEIDP-------YYNRYSSTVHHAGS 506
L D S Y + K + + D+ QN+ + +KEI P N S++V+ A
Sbjct: 38 LHDQSKNYDEFKNNVLSCGGEFTDSFLQNISRLIKEIKPKDDIPTDNVNNGSNSVNGASH 97
Query: 507 HYDNVRINKPDEFDMVIEIGVP 572
D+ ++K + M + +P
Sbjct: 98 DLDSKDVDKQHQRKMFPGLSIP 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,451,253
Number of Sequences: 5004
Number of extensions: 71377
Number of successful extensions: 212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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