Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B24
         (874 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)                35   0.100
SB_19235| Best HMM Match : Mad3_like (HMM E-Value=7.3)                 35   0.100
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)                 33   0.30 
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)                      29   3.8  
SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2)                      29   3.8  
SB_49274| Best HMM Match : p450 (HMM E-Value=0)                        29   5.0  
SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)                  29   6.6  
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               28   8.7  
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               28   8.7  
SB_662| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.7  

>SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
 Frame = +3

Query: 300 SDKVPYNPKI-TNLESLLADISVRY-IQLKESDXELHYKVLDTIFQNLHKKMKEIDPYYN 473
           +DKV  N +  ++L   L ++  ++ + L++ +     K ++ I     KK+   D    
Sbjct: 61  TDKVLKNARCRSHLNHYLDELDRKFSVDLRDQEVINIRKDMEYIASQFAKKVACHDA--- 117

Query: 474 RYSSTVHHAGSHYDNVRINKPDEFDMVIEI 563
           R+   + ++GSHY+ ++++ PDEFD +IEI
Sbjct: 118 RFKGEILNSGSHYEGLQVSAPDEFDYMIEI 147


>SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)
          Length = 364

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 429 QNLHKKMKEIDPYYNRYSSTVHHAGSHYDNVRINKPDEFDMVIEI 563
           Q + K ++E + YY      +   GS+Y+  ++  PDEFD++IEI
Sbjct: 36  QKILKFVEERNTYYK--FDRLLMTGSYYERAKVKNPDEFDLMIEI 78


>SB_19235| Best HMM Match : Mad3_like (HMM E-Value=7.3)
          Length = 100

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 429 QNLHKKMKEIDPYYNRYSSTVHHAGSHYDNVRINKPDEFDMVIEI 563
           Q + K ++E + YY      +   GS+Y+  ++  PDEFD++IEI
Sbjct: 36  QKILKFVEERNTYYK--FDRLLMTGSYYERAKVKNPDEFDLMIEI 78


>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
          Length = 1318

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 576 CFHEKTNNRXESDIKFEPRHAGYVQLKMGPQFQNLPMRDGVDWQINKTAYL 728
           CF +KT    E  ++ +P      Q  M P   N P+R+G   ++NK AYL
Sbjct: 742 CFQDKTGEPIEFKLEMDPEATPVAQRPMLPTTCNNPLRNGSIRELNK-AYL 791


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 303 DKVPYNPKITNLESLLADISVRYIQLKESDXELHYKVLDTIFQNLHKKMKEIDPYYNRYS 482
           D++P    +T LESL  ++  R    +ES+     K LDT   +L K +   + Y+ R  
Sbjct: 627 DRIPLQMALTQLESLADNLKER---KRESELRSRVKQLDTATAHLSKPLSSGNRYFIRQD 683

Query: 483 STV 491
             V
Sbjct: 684 DFV 686


>SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)
          Length = 318

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 630 WVQILYRSRXDYLFSRGSKEAHLFR*PCRIHRVCLYAHCRSDSRH 496
           W + ++R R   + +  +  AH  R   R+H +  +  C+SDS+H
Sbjct: 14  WAESMFRGRNVVVLTPENDLAHGHRNNSRLHDINGWVWCQSDSQH 58


>SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2)
          Length = 340

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 501 GSHYDNVRINKPDEFDMVIEI 563
           GS Y+ ++I  PDEFD +IE+
Sbjct: 140 GSTYEMLKIGMPDEFDFMIEL 160


>SB_49274| Best HMM Match : p450 (HMM E-Value=0)
          Length = 568

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 705 QINKTAYLWKDESNFLLSTKFLDWFKSVVXRALNKFDTENGQSVYNVGRR 854
           +I+K    +++ SN    T FL W +  + + L+KF+ EN +++ +  R+
Sbjct: 261 EISKAGRKFQESSNLAFLTDFLPWTRLALKKPLDKFE-ENIRALMDFVRK 309


>SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)
          Length = 875

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 435 LHKKMKEIDPYYNRYSSTVHHAGSHYDNVRINKPDEFDMVIEIGVPLCFHE 587
           L  K+  +DP  +   S +   GS  + ++++ PDE+D ++ + VP   +E
Sbjct: 468 LISKVSVLDPALD--FSDIILTGSVSEGLKVHNPDEYDYLLILNVPFSVYE 516


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +1

Query: 373 YNSRKVIXNYITKC*IQYSKIFTRK*KKLIHTTTDIRARYIMPGVTT 513
           + S KV+  Y+ +  +  SK+ +R  +   HT++ + + Y+  GV +
Sbjct: 185 HTSSKVLSAYVQQGVVTSSKVLSRPARCCQHTSSKVLSAYVQQGVVS 231


>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 626 FKFYIALVSIICFLVEAKRHTYFDNHVEFI-GFVYTHIVVVTPGMMYRARISVVVWINFF 450
           +++ ++++S+ C       H  +      I      HIV+V   + YR R+SV+ W    
Sbjct: 181 YRYRVSVISLSCICHIVIVHPSYRYRASVILSSCICHIVIVY--LSYRCRVSVISWSCIR 238

Query: 449 HFLVKILEY 423
           H +V    Y
Sbjct: 239 HIVVVYPSY 247


>SB_662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/55 (23%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = +3

Query: 303 DKVPYNPKITNLESLLADISVRYIQLKESDXELHYKVLDTIFQN--LHKKMKEID 461
           +K+ +  +I +LES+++D      QLK ++ +L  ++ ++  +N  L +++K+++
Sbjct: 240 EKMAFEGRIIHLESMVSDKDEEISQLKGTNADLSSQIKESKVKNQELEQRVKDLE 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,892,537
Number of Sequences: 59808
Number of extensions: 513852
Number of successful extensions: 1367
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)