Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_B24
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53153-2|AAQ91899.1| 422|Caenorhabditis elegans Hypothetical pr... 31 1.1
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 31 1.4
AF025465-9|AAB71020.2| 136|Caenorhabditis elegans Hypothetical ... 30 1.9
Z72515-2|CAA96682.3| 329|Caenorhabditis elegans Hypothetical pr... 29 3.3
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 29 3.3
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 28 7.6
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U53153-2|AAQ91899.1| 422|Caenorhabditis elegans Hypothetical
protein T19A5.3b protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 396 ELHYKVLDTIFQNLHKKMKEID-PYYNRYSSTVHHAGSHYDNVRINKPDEFDMVIEIGVP 572
E K ++ ++ L K I+ P N SS H+G HY ++N P + + ++E+ P
Sbjct: 61 EARRKRIEARWKRLGINFKTINHPLLNTESSESSHSGHHYTIRQLNAPKKVEKLVEVERP 120
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 396 ELHYKVLDTIFQNLHKKMKEID-PYYNRYSSTVHHAGSHYDNVRINKPDEFDMVIEIGVP 572
E K ++ ++ L K I+ P N SS H+G HY ++N P + + ++E+ P
Sbjct: 129 EARRKRIEARWKRLGINFKTINHPLLNTESSESSHSGHHYTIRQLNAPKKVEKLVEVERP 188
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 360 SVRYIQLKESDXELHYKVLDTIFQNLHKK-MKEIDPYYNRYSSTVHHAGSHYDNVRINKP 536
S I+L + + E + K ++ +N ++ KE+D + ++S+TV+H + + +
Sbjct: 252 STEKIELIQKEAEDYRKRIEEDIRNRQQRHKKEVDAHQEKFSATVNHQNAVIEELTQTVK 311
Query: 537 DEFDMVIEIGVPLCFHEKTNNRXESDIK 620
+ + E+ L EK +R + D+K
Sbjct: 312 QKQSEIAELKDQL---EKQESRIKGDLK 336
>AF025465-9|AAB71020.2| 136|Caenorhabditis elegans Hypothetical
protein K02E7.11 protein.
Length = 136
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = -3
Query: 626 FKFYIALVS-IICFLVEAKR----HTYFDNHVEFIGFVYTHIVVVTPGMMYRARISVVVW 462
F ++I+ +S +IC L + KR H YF++ + FI F I++V+ M+ V +
Sbjct: 61 FLWFISSISALICVLQDQKRYLRFHIYFNSVITFIYFCKLIILLVSINMVTSILCIVCNF 120
Query: 461 INF 453
+NF
Sbjct: 121 VNF 123
>Z72515-2|CAA96682.3| 329|Caenorhabditis elegans Hypothetical
protein T11A5.2 protein.
Length = 329
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 608 LVSIICFLVEAKRHTYFDNHVEFIGFVYTHIVVVTPGMMYRARISVVVWINF 453
L++I+ FL+ A + + F G V + V TP Y A++ V I F
Sbjct: 146 LLAIVHFLIAALPLCFLYSQTRFDGAVMYYCVTATPSAPYSAQVGATVSICF 197
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 436 FTRK*KKLIHTTTDIRARYIMPGVTTTMCV*TNPMNSTW 552
F R + L T D R + + TT+ V T+P NSTW
Sbjct: 2774 FPRTEENLYEITKDCRLLFNSDVINTTIPVVTSPANSTW 2812
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
C23F12.1a protein.
Length = 2329
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +3
Query: 258 RNSRAPESKCKEGISDKVPYNPKITNLESL--LADISVRYIQLKESDXELHYKVLDTIFQ 431
+ RA K K+ S + P ++ + SL + S +++ D +L +VLD+
Sbjct: 1132 KEERATLKKEKKSKSHRFPAKTTVSKIPSLSRVGQPSSLVVEVSGHD-QLEIRVLDSKKS 1190
Query: 432 NLHKKMKEIDPYYNRYSSTVHHAGSHYDNVR 524
+ + EI+P + + + T G H +VR
Sbjct: 1191 EIGTDIVEIEPGHMQINFTPAQVGDHEIDVR 1221
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +3
Query: 258 RNSRAPESKCKEGISDKVPYNPKITNLESL--LADISVRYIQLKESDXELHYKVLDTIFQ 431
+ RA K K+ S + P ++ + SL + S +++ D +L +VLD+
Sbjct: 1132 KEERATLKKEKKSKSHRFPAKTTVSKIPSLSRVGQPSSLVVEVSGHD-QLEIRVLDSKKS 1190
Query: 432 NLHKKMKEIDPYYNRYSSTVHHAGSHYDNVR 524
+ + EI+P + + + T G H +VR
Sbjct: 1191 EIGTDIVEIEPGHMQINFTPAQVGDHEIDVR 1221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,766,606
Number of Sequences: 27780
Number of extensions: 396318
Number of successful extensions: 1194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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