Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B20
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    28   0.071
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.5  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   8.1  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   8.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.1  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 179 SLSRFPARLNSVNYAQAASNAPKITFVKFEPPKEE 283
           SL RF     +VNY Q  S   KI+ +K  PP EE
Sbjct: 9   SLERF-CTYGNVNYRQRRSQPLKISCLKTTPPPEE 42


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 395 MLTTYASALGIGALVSQNDISHYITMIEGLNLSPATLFLAKV 520
           +L  Y   + I   +S   I + I ++ G  + P T+FL  V
Sbjct: 631 LLMDYEHTVKINENISMPYIGYQIILMIGTVIGPGTIFLMLV 672


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 395 MLTTYASALGIGALVSQNDISHYITMIEGLNLSPATLFLAKV 520
           +L  Y   + I   +S   I + I ++ G  + P T+FL  V
Sbjct: 864 LLMDYEHTVKINENISMLYIGYQIILMIGTVIGPGTIFLMLV 905


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 395 MLTTYASALGIGALVSQNDISHYITMIEGLNLSPATLFLAKV 520
           +L  Y   + I   +S   I + I ++ G  + P T+FL  V
Sbjct: 864 LLMDYEHTVKINENISMLYIGYQIILMIGTVIGPGTIFLMLV 905


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 580 HSQRIVDQRSVFYRICHVGG 639
           +S++ +   S FY+IC++ G
Sbjct: 6   YSKKDIRSLSFFYKICNIFG 25


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 580 HSQRIVDQRSVFYRICHVGG 639
           +S++ +   S FY+IC++ G
Sbjct: 6   YSKKDIRSLSFFYKICNIFG 25


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 456 EISFCDTNAPIPSALAYVVNIIP 388
           E   C  N P+P   + ++N  P
Sbjct: 399 EAKHCGVNVPVPPMQSQIINPQP 421


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,330
Number of Sequences: 336
Number of extensions: 3498
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)