Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_B17
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 64 2e-11
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 32 0.081
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.11
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.19
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 29 0.99
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 28 1.7
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 27 3.0
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 4.0
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 7.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 9.3
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 25 9.3
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 64.5 bits (150), Expect = 2e-11
Identities = 30/82 (36%), Positives = 43/82 (52%)
Frame = -2
Query: 712 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLG 533
P P P P P++P P+VP+ P P +P P +P P +P +P P PV+P +P
Sbjct: 605 PQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSV 664
Query: 532 PRGPCGPI*PFCPLGPCAPSAP 467
P+ P P+ P P P P+ P
Sbjct: 665 PQPPAAPVVPEVPSVPQPPAVP 686
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/82 (36%), Positives = 43/82 (52%)
Frame = -2
Query: 712 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLG 533
P P P P P++P P+VP+ P +P P +P P +P +P P APV+P +P
Sbjct: 545 PQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSV 604
Query: 532 PRGPCGPI*PFCPLGPCAPSAP 467
P+ P P+ P P P P+ P
Sbjct: 605 PQPPVAPVAPEVPSVPQRPAVP 626
Score = 63.3 bits (147), Expect = 4e-11
Identities = 32/82 (39%), Positives = 41/82 (50%)
Frame = -2
Query: 712 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLG 533
P P P P P +P +PSVP P P P +P P P +P++P P P P +P+
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVV 643
Query: 532 PRGPCGPI*PFCPLGPCAPSAP 467
P P P P P+ P APS P
Sbjct: 644 PEVPSVPQRPAVPVVPEAPSVP 665
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/82 (37%), Positives = 41/82 (50%)
Frame = -2
Query: 712 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLG 533
P P P P P++P P P+ P +P +P P P P P +P P APV+P P
Sbjct: 590 PQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSV 649
Query: 532 PRGPCGPI*PFCPLGPCAPSAP 467
P+ P P+ P P P P+AP
Sbjct: 650 PQRPAVPVVPEAPSVPQPPAAP 671
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = -2
Query: 712 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLG 533
P P P P ++P P P+ P +P +P P +P P P +P P APV P P
Sbjct: 560 PQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSV 619
Query: 532 PRGPCGPI*PFCPLGPCAPSAP 467
P+ P P+ P P P P+AP
Sbjct: 620 PQRPAVPVVPEAPSVPQPPAAP 641
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/76 (36%), Positives = 39/76 (51%)
Frame = -2
Query: 712 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLG 533
P P P P P +P +PSVP P+ P +P +P P P +P++P P P P +P+
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVV 673
Query: 532 PRGPCGPI*PFCPLGP 485
P P P P P+ P
Sbjct: 674 PEVPSVPQPPAVPVVP 689
Score = 57.2 bits (132), Expect = 2e-09
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = -2
Query: 685 PFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI* 506
P P P PS P +P+ P +P P P P +P++P P P++P+ P P P
Sbjct: 533 PAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQP 592
Query: 505 PFCPLGPCAPSAP 467
P P+ P APS P
Sbjct: 593 PVAPVVPEAPSVP 605
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 586 PILPANPFAPVLPLSPLGPRGPCGPI*PFCPLGPCAPSAP 467
P +P P APV+P +P + P P+ P P P P+AP
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAP 551
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 32.3 bits (70), Expect = 0.081
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = -2
Query: 703 PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRG 524
P P +P PS P+QP G+P P P P++P PV + P P
Sbjct: 389 PVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPMQPVQSTQYYQPSSPVQPVQNVKPAQPAQ 448
Query: 523 P 521
P
Sbjct: 449 P 449
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Frame = -2
Query: 655 SVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSP------LGPRGPCGPI*PFCP 494
++PL+ S P PG P + +P P + APV P +P P P P
Sbjct: 1425 TMPLKASQPTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQ 1484
Query: 493 LGPCAPSAP 467
L P P+ P
Sbjct: 1485 LPPAVPNVP 1493
Score = 27.9 bits (59), Expect = 1.7
Identities = 24/83 (28%), Positives = 32/83 (38%)
Frame = -2
Query: 712 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLG 533
P P P +P +P + P P PG+ + P PA P APV L P
Sbjct: 1433 PTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAP--SSAPAPP-APVSQLPPAV 1489
Query: 532 PRGPCGPI*PFCPLGPCAPSAPS 464
P P + P P + AP+
Sbjct: 1490 PNVPVPSMIPSVAQQPPSSVAPA 1512
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = -2
Query: 676 PAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPLSPLGPRGPCGPI*PFC 497
P P P+QP PG+ +P P P + P +P P+ P P
Sbjct: 1448 PPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPS 1507
Query: 496 PLGPC-APSA 470
+ P APS+
Sbjct: 1508 SVAPATAPSS 1517
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 712 PA*PRGP*EPFG-PA-IPGSPSVPLQPSLPGIPGLPWSPG 599
P P G P G PA PG P+VP P +PG P +PG
Sbjct: 523 PMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562
Score = 30.7 bits (66), Expect = 0.25
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Frame = -2
Query: 703 PRGP*EPFGPAIPGSPSVPL-QPSL--PGI---PGLPWS-PGDP*IPILPANPFAPVLPL 545
P G P P PG P++ + QP + PG+ PG+P PG P +P +P P A P
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPG 559
Query: 544 SP 539
+P
Sbjct: 560 AP 561
Score = 29.1 bits (62), Expect = 0.75
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +3
Query: 570 FAGRMGIQGSPGDQGRPGIPGRDGCNGTDGEPGIAGPKGSQGPRGYA 710
F G + PG G PG G T + P G P GY+
Sbjct: 539 FPGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNGYS 585
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 28.7 bits (61), Expect = 0.99
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 694 P*EPFGPAIPGSPSVPLQPSLPGIPGLP 611
P PF IP SP++P+ PS +P P
Sbjct: 296 PFYPFDSGIPVSPNIPVSPSSSFVPMYP 323
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 670 IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLP 548
+P + P SLP P P P IP+ P++ F P+ P
Sbjct: 283 LPNAYPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYP 323
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 567 GFAGRMGIQGSPGDQGRPGIPGRDGCNGTDGEPGIAGPKGSQGPRGYA 710
G + G GS + G G G NG+ G G S G GY+
Sbjct: 59 GSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAGYS 106
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 723 LLWIQRNHAVLENLLVQLFQVHHQFHYNHLFLVYPVY 613
L WI +H EN+ + + + F++++ F++ PVY
Sbjct: 336 LAWIGGSHP--ENVFITIGAIATIFYFSYFFILIPVY 370
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -2
Query: 685 PFGPA--IPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPA-NPFAPVLPLSPLGPRGP 521
PF A PG P++P+ G G P P P ++ + +P A +P +P+ P P
Sbjct: 261 PFTAAQHFPGMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAATIPGAPVMPNIP 318
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 676 PAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANPFAPVLPL 545
PA +PS+P+ PS+P +PG+ P + A P +PL
Sbjct: 425 PAPLVTPSLPV-PSIPAVPGMEAMAMPPGVTSSIAVPTTSSMPL 467
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 676 PAIPGSPSVPLQPSLPGIPGLPWSPGDP-*IPILPANP 566
PA + ++P PS+P + G P +P P +P LP P
Sbjct: 401 PAFKSAMAIPDMPSMPHVQGFP-APFPPFMMPGLPQMP 437
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = +3
Query: 195 EVAPDTERPYAVNQYGLYNRNDIPPQSRPEPELGQNFAVYDPDTRQRTSTAINRNCTAPG 374
EV D +R +QYG+ N PP E G F + P + + N PG
Sbjct: 53 EVLSDPQRRKLYDQYGITEGNAAPPPPGAEGGPGAGFGGF-PGAGPGGARTFHFNMGGPG 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,650
Number of Sequences: 5004
Number of extensions: 70671
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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