Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B16
         (556 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    25   0.44 
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    25   0.44 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.5  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 191 LGRNDSDFFTYSFICIKXQVLILYSIFQ 108
           L ++ SD+F +SF      +L +YS+F+
Sbjct: 48  LKQHKSDYFYFSFYITSYTLLSVYSLFR 75


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 191 LGRNDSDFFTYSFICIKXQVLILYSIFQ 108
           L ++ SD+F +SF      +L +YS+F+
Sbjct: 48  LKQHKSDYFYFSFYITSYTLLSVYSLFR 75


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 250 ECLRRLIKCVANPAILFLRGLVGMIAISSHILLFV 146
           +CL +L K  +    L L G     AI S IL+FV
Sbjct: 143 KCLYKLWKMPSLSEFLSLFGTETCPAIGSAILIFV 177


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 250 ECLRRLIKCVANPAILFLRGLVGMIAISSHILLFV 146
           +CL +L K  +    L L G     AI S IL+FV
Sbjct: 143 KCLYKLWKMPSLSEFLSLFGTETCPAIGSAILIFV 177


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +3

Query: 267 SIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 386
           ++K +E++ ++  +     +    D+I+V+P+  D  K L
Sbjct: 265 AVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTL 304


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +1

Query: 115 ILYKINTXILIQIKEYVKKSLSFLPSLLGIKLL 213
           + +  N   L+Q K+YV++       L+ + +L
Sbjct: 132 VAFNTNIISLVQNKDYVERDTDIRRFLIKVTIL 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,202
Number of Sequences: 336
Number of extensions: 2106
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)