Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B16
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            115   3e-26
10_07_0174 + 13815478-13815903                                        114   4e-26
03_02_0943 + 12598616-12598789,12599790-12601250                       31   0.47 
06_01_0889 - 6807449-6809257                                           30   1.4  
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717...    28   4.4  
12_02_0594 - 20883859-20884200,20884250-20884528,20884931-208851...    28   5.8  
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464...    28   5.8  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    27   7.6  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  115 bits (276), Expect = 3e-26
 Identities = 56/97 (57%), Positives = 75/97 (77%)
 Frame = +3

Query: 135 LXFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYV 314
           L F TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQEEERERR ++V
Sbjct: 26  LDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEEERERRMDFV 85

Query: 315 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 425
           P+ SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 86  PDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  114 bits (275), Expect = 4e-26
 Identities = 54/96 (56%), Positives = 73/96 (76%)
 Frame = +3

Query: 135 LXFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYV 314
           L F TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQEEERERR ++V
Sbjct: 26  LDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERERRMDFV 85

Query: 315 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 422
           PE SALE + I VD +T +ML  L   ++ G++  Q
Sbjct: 86  PEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121


>03_02_0943 + 12598616-12598789,12599790-12601250
          Length = 544

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 19/60 (31%), Positives = 35/60 (58%)
 Frame = +3

Query: 210 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 389
           A +++HL+RR+        + K Q EE ++  +   + + LEHD+I  + +T D+LK L+
Sbjct: 41  AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 240 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 362
           LRH Q R I ++ +    R R + YVP+     HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


>03_05_0062 +
           20370608-20370977,20371062-20371541,20371661-20371731,
           20371836-20371912,20372076-20372223,20372346-20372507,
           20372743-20372940
          Length = 501

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -1

Query: 88  LDGFSPDTTHGLKL-YSAAFDENQ 20
           ++G SPD T+G+KL  S A+D NQ
Sbjct: 443 VEGSSPDLTNGVKLGQSMAYDSNQ 466


>12_02_0594 -
           20883859-20884200,20884250-20884528,20884931-20885106,
           20885254-20885725
          Length = 422

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 91  SGEDYY*KILYKINTXILIQIKEYVKKSLSFLPSLLGIKLLD 216
           S EDYY  ++Y +   + +++ +   +S + L  LLG+  LD
Sbjct: 377 SNEDYYQSVIYAVIDLLRVELNDRFSESSTVL--LLGVACLD 416


>05_01_0006 -
           44159-44206,44805-44850,45730-45818,46377-46394,
           46490-46609,46702-46772,47038-47086,47567-47658,
           47769-47811,47928-48049,48143-48426,48961-49148,
           49220-49336,49516-49557,49991-50101,50530-50688,
           50710-50769,50850-50927,51010-51103,51182-51483,
           51659-51721,51808-51936
          Length = 774

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +3

Query: 264 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 386
           ++I++Q  +  +R   + +V A E   I  DP+TK+++K +
Sbjct: 615 LAIEVQPLDDRKRKGEIVKVYANEQKKITCDPETKELIKKI 655


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 246 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIIEVDPD 362
           H Q + I  KL E  R  R+  Y PEV A  HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,567
Number of Sequences: 37544
Number of extensions: 215010
Number of successful extensions: 591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)