Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B11
         (906 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             339   1e-93
SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)                       31   1.3  
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            31   1.7  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   6.8  
SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)                29   6.8  
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  339 bits (834), Expect = 1e-93
 Identities = 161/224 (71%), Positives = 181/224 (80%)
 Frame = +2

Query: 197  VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFT 376
            VY+FKYDSTHGRFKG+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFT
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 377  TTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKV 556
            T +KA  HL+GGAKKVIISAPSADAPMFV+GVN E YDPS  V+SNASCTTNCLAPL KV
Sbjct: 877  TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936

Query: 557  IHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPA 736
            I+DNF + EGLM             DGPS K WRDGRGA QN+IPASTGAAKAVGKVIP 
Sbjct: 937  INDNFGLEEGLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQNVIPASTGAAKAVGKVIPE 996

Query: 737  LNGKLTGMAFRVPVANVSVVDLTVRLGKPAXYEXIXQKVKEAXE 868
            +NGKLTGMAFRVPVA+VSVVDLT RL KPA YE I   VK+A E
Sbjct: 997  VNGKLTGMAFRVPVADVSVVDLTCRLKKPAKYEEIKAVVKKASE 1040


>SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)
          Length = 148

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = -3

Query: 799 INXRYISXRDAECHSSQLAIKSRDNLTHSFGSTSRGRNDVL-LSTTAITP*FSRRS---I 632
           IN  +   R        LA K+  N  HSF    + R   + +ST  +T  F  R    +
Sbjct: 10  INNLFPGSRSPRSELELLATKAAKN--HSFKKIYKIRRSFIDVSTLGLTSGFESRGSRYV 67

Query: 631 NSFLCSSCGMNSSHQALNNFKVIMNNL 551
           N+ LC  C     H+AL   K I   L
Sbjct: 68  NARLCKLCWQQRGHRALFRGKAIQGLL 94


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 435 LPVLMPPCLLWVLT*KLMTPLLRSSQMLL 521
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
 Frame = +3

Query: 225 MAVLRAVLRFRMDSLLLMVTKL-LFSQKGTLRPFRGEKLGLNML*SLLVSLPLQIKHLLT 401
           +A L+ V+  ++ + L ++T L + +    L P +     L +L  L V +PLQ+   LT
Sbjct: 380 LAPLQVVITLQVLTSLQVLTSLQVLTSLQVLTPLQ-VPTPLQVLIPLQVLIPLQV---LT 435

Query: 402 WREVLKKLLYQLP--VLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTVLPHLQRLFMI 566
             +VL  L   LP  VL+P  +L  L   +   +L   Q+L  PQ + P LQ L ++
Sbjct: 436 PLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQVLTPPQVLAP-LQVLILL 491


>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
 Frame = +3

Query: 357 SLLVSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTV 536
           +LLV L  +   +L  + + + LL  +  L+   LL VL   LM  LLR + ++L  + +
Sbjct: 104 ALLVKLLRRALLVLINKLLRRALLVLINKLLRRALL-VLMNVLMNKLLRGALLVLMNKLL 162

Query: 537 LPHLQRLFMITXXXXXXXXXXFMPQLLHRKLLMDLLENY-GVMAVVLNKTSFLPLLVLPK 713
               + L ++            M +LL R LL+ + +   G + V++NK     LLVL  
Sbjct: 163 R---RALLVLMNKLLRGALLVLMNKLLRRALLVLMNKLLRGALLVLMNKLLRRALLVLMN 219

Query: 714 LWVRLSLLLM 743
             +R +LL++
Sbjct: 220 KLLRRALLVL 229


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 671 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 790
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 374 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 413


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 432 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 298
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)
          Length = 428

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 662 GRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPAXYEXI 841
           GR A   II   T AAKAV + +  + GK  G+A +  ++ +   ++ + L K    E  
Sbjct: 139 GRDAVSQIITFGTMAAKAVVRDVARVQGKAFGLADK--LSKLIPFEVGITLSKAMEQEPA 196

Query: 842 XQKVKEAXE 868
            ++  E+ E
Sbjct: 197 LREFVESSE 205


>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 671 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 790
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 63  AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,145,685
Number of Sequences: 59808
Number of extensions: 593704
Number of successful extensions: 1335
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)