Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B10
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    30   0.47 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.4  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.4  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   4.4  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   5.8  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   7.7  

>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
 Frame = +1

Query: 388 QYPP-NLKPPKMQK-RLRYMRGPEEVHTTLQLKQYGVRATGGG-RMKHEHFEMARLVVAR 558
           QY P +++  K QK R+    G     T L+  +YG+R      R   +  E A  ++ R
Sbjct: 39  QYAPRSIRNQKAQKGRVPIPIGGSLRGTQLEWGEYGMRLKDRSIRFHAKQLETAEQILKR 98

Query: 559 KLDMKRMFAIWRIDPPWQPITXXXXXXXXXXXXXAIDHYVTPIKSGRIILEVGGKCEYAE 738
            L   +   ++       P+              A +++   I  GR++ E+GG     E
Sbjct: 99  ILKPIKAARVYTRFCCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 739 VHD-MLRIISERLPFKAEPVLKRFXSR 816
           + +  L+  +  LP K E ++K+   R
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQTPKR 185


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 316  PPPKNYDHIEIPERQRL 366
            PPP+N DH+++PE  +L
Sbjct: 4076 PPPENEDHLDLPEDLKL 4092


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 437 YLSLFCILGGFKFGGYCGTLSYTR 366
           Y + FC  GG  FGGY G   Y R
Sbjct: 448 YNTYFCFAGGAGFGGYGGHGGYVR 471


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 352 ERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEVHTTLQL 477
           ER+ L  Y   P Y P+++PPK +K+    +GP     T++L
Sbjct: 3   ERKVLNKYIP-PDYDPSIRPPKKKKK---FQGPNGGKLTVRL 40


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
 Frame = -1

Query: 569 MSNFLATTKRAISKCSCFILPPPVARTPYCFNCNVVWTSSGPLMYLSL-------FCILG 411
           M    +TTK     C    L   + R  +CF   V   S   +  LSL       F    
Sbjct: 582 MGQCFSTTKEINRFCVDISLQDDIVRNNHCFTDGVGMASLSVIRRLSLEVKNHDMFPSAF 641

Query: 410 GFKFGGYCGTLS 375
            F+ GGY G LS
Sbjct: 642 QFRMGGYKGVLS 653


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 676 HNDQ*LLFHHPFADLVLSWLWVAMED-LFSRWQTYA 572
           HN   LLF HPF  L L +  V +++ LF + +T A
Sbjct: 188 HNPSQLLFEHPFMALGLIFGSVVLKEWLFRKTRTVA 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,360,277
Number of Sequences: 5004
Number of extensions: 71406
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)