Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B10
         (842 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59453| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   7e-05
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)                  33   0.22 
SB_22394| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-38)                 30   2.7  
SB_52824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                29   6.2  

>SB_59453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 32/101 (31%), Positives = 44/101 (43%)
 Frame = +1

Query: 481 QYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITXXXXXXXXXXXXX 660
           +YGV A   G +K    E ARL + RK   K++  I        P+T             
Sbjct: 114 RYGVYAAQPGLVKASALESARLAIIRKTKNKQIIMI----KAHVPMTKKALGSRMGKGKG 169

Query: 661 AIDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFK 783
            +DHYV  +K+G+I+ E     E A   +  R  S RLP K
Sbjct: 170 KMDHYVANVKAGKILFEYSSDSE-ALALEAFRQASNRLPVK 209


>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
          Length = 625

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
 Frame = +1

Query: 304 LKYFP-PPKNYDHIEIPERQRLRVYDKVPQYPPNL------KPPKMQKRLRYMRGPEEV- 459
           L++FP PP +Y   E    Q +      PQYPPN+      +  +MQ+R+ YMR  ++  
Sbjct: 453 LRHFPYPPDSYP--EPVHMQTIHHRPYPPQYPPNMPRQHPQEHHEMQRRVNYMRQQQQYQ 510

Query: 460 HTTLQLKQYGVRATGGGRMKHEHFE 534
               Q +Q  ++A   G+M  ++ E
Sbjct: 511 QQQYQQQQQRLQALPQGQMVTQYAE 535


>SB_22394| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-38)
          Length = 401

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 175 SHLFKTSLTGVN*ISDYF*LD*LRSLIYFAILNTIIICNTLVIKTVFETLL 23
           + L    LT V  + + F L   R +I+  ++   ++ N++VIKTVFE  L
Sbjct: 16  TELQPNELTSVTQLREPFGLKVFRGMIFAFVVIASLLGNSVVIKTVFENSL 66


>SB_52824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +1

Query: 304 LKYFPPPKNYDHIEIPERQRL-RVYDKVPQYPPNLKPPKMQKRLRYMRGPEEVHTTLQLK 480
           L Y      ++  ++ E +R+ + Y+K+     +LK  K++K L   + PEE+   L   
Sbjct: 99  LDYDSKRDRWNGYDVNEHKRIIQEYEKIELAKQHLKAEKLEKDLAEGKKPEEIKEVLSDD 158

Query: 481 QYGVRATGGGRMKHEHFEMARLVVARKLDMK 573
           +   +      M  + F+  R    R L ++
Sbjct: 159 EDEDKYADDADMPGQKFDTKRRTTVRNLRIR 189


>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 737

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +1

Query: 670 HYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVLKRFXSRKQLKKN 834
           +Y  PI+    +L V G+ E  EV+    + +E    K EPV+K+F    Q +KN
Sbjct: 287 YYEVPIRGTATLLTVIGE-EAREVYSTFTL-TEGETDKIEPVIKKFAEYCQPRKN 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,487,890
Number of Sequences: 59808
Number of extensions: 507131
Number of successful extensions: 1191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)