Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B10
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 568 CLISWQQLSEPFQNVRV 518
           CLISW  L +P Q +++
Sbjct: 429 CLISWNPLMQPKQPIKL 445



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/48 (22%), Positives = 19/48 (39%)
 Frame = -3

Query: 453 LWSSHVPESLLHLGWF*VWRILWHFIIYPQPLSFGYFNMVIIFWRRKI 310
           LW +H P       W+  W+ +    I  +PL   +F   +    R +
Sbjct: 660 LWLNHSPNYDQVTNWYMGWKGMLSEKILAEPLVKEHFKKALELMNRAV 707


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +3

Query: 564 RHEA-YVCHLENRSSMATHNQERTRSANGWW 653
           RH   YVC  EN +  A+H+   T +    W
Sbjct: 651 RHAGEYVCTAENAAGTASHSTTLTVNVPPRW 681


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 508 HLQWHGHHIVSTVM 467
           HLQ H HH+ ST +
Sbjct: 143 HLQNHHHHLQSTAV 156


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 437 YLSLFCILGGFKFGGYC 387
           Y+++  I+GG +FG  C
Sbjct: 632 YITIEAIIGGGEFGDVC 648


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,503
Number of Sequences: 438
Number of extensions: 5149
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)