Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B09
         (923 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    34   0.002
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   0.63 

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 10/216 (4%)
 Frame = +3

Query: 234 QNSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLAVPLDSFEIVWKKNSVPLGEVAGL 413
           ++  T+  VT P +  +  +      GRP    C       +FE        P+  ++ L
Sbjct: 316 ESVETVLTVTAPLKAKIEPQVQTIDFGRPATFTC-------NFE------GNPIKTISWL 362

Query: 414 KERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTGHIKAWM---VTGNVHAKMTKDA-- 578
           K+ + + +     +I+    ED  G Y C ++N     +A     + G       + A  
Sbjct: 363 KDGHPIDHNEAVLRIESVRKEDK-GMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFN 421

Query: 579 --NVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTV 752
              V  G ++ + C   G P  E+TW+     L N       +G  V +  +     N  
Sbjct: 422 EETVQPGNSVFLKCIASGNPTPEITWELYGRRLSNSE--RNQIGQYVTVNGDVVSHLNIT 479

Query: 753 LVLXNAERADAGLYQC---SPAGGTPADVTLRVKGV 851
            +  N    D GLY+C   S  G       + V G+
Sbjct: 480 AIHTN----DGGLYRCVASSKVGSADHSARINVYGL 511



 Score = 29.9 bits (64), Expect = 0.029
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
 Frame = +3

Query: 486 GNYTCGLKNQTGHIKAWMVTG--NVHAKMT---KDANVVEGQNIKITCKLIGKPYSEVTW 650
           GNYTC L + +  +  +  +   NV  +      D    +G +  + CK  G P   VTW
Sbjct: 674 GNYTC-LASNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTW 732

Query: 651 KYKKDELDNGTDVSAVLGSRVQLEKNEQGL--DNTVLVLXNAERADAGLYQCSPAGG 815
           K         T VS   G     + N   +  ++  L + N ++ + G Y C    G
Sbjct: 733 K-------RATGVSP--GDYKDFKPNNPDIKVEDGTLTINNIQKTNEGYYLCEAVNG 780



 Score = 29.5 bits (63), Expect = 0.039
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
 Frame = +3

Query: 477 DDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVT 647
           +D G Y C   ++ G   H     V G    +  +   +V G  + + C   G P   V 
Sbjct: 484 NDGGLYRCVASSKVGSADHSARINVYGLPFVRSMEKQAIVAGGTLIVHCPFAGHPVDSVV 543

Query: 648 WKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLXNAERA-DAGLYQC 800
           W  ++D            G ++ + + ++   N  L++ N ERA D   Y C
Sbjct: 544 W--ERD------------GRQLPINRKQKVFINGTLIIENVERASDQATYDC 581


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 697 TALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFCPSTTLASLVILAC 554
           +AL SV +  S  L  H T E+ LP+ L  +   CP   L  +  L C
Sbjct: 345 SALASVIMGLSPILGRHNTIEHLLPLFLTQLKDECPEVRLNIISNLDC 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,960
Number of Sequences: 336
Number of extensions: 3508
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25858250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)