Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B09
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   2.8  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    27   2.8  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    27   4.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.5  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   6.5  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    26   8.6  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   8.6  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 218 SSYECPKLVNDCSGHRAHPRTGQL 289
           S   C K  NDCSGH    + GQL
Sbjct: 292 SEEACSKATNDCSGHGRCSKYGQL 315


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 627 KPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLXNAERAD 782
           KP+ +  WK KKD +D  T V    G   +L +N+  + + V  L   +R +
Sbjct: 375 KPFEKQFWKIKKDLMD--TVVFFQKGKFYELYENDAAIGHQVFSLKLTDRVN 424


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 564 MTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSA-VLGSRVQLEKNEQGL 740
           +T +  +++ Q I      + +P+   +W    +E  +   +S  V+G R++L+K + GL
Sbjct: 108 VTGEGGLMDAQLITAEADNLTRPHW-TSWTENSEEFPSSLVMSTGVIGQRLKLDKIQSGL 166

Query: 741 DNTV 752
           ++ V
Sbjct: 167 EHAV 170


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +3

Query: 210 ACGVLTSAQNSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLAVPLDSFEIV 371
           A  ++T A ++    P T+ T ++V++  +  ++G PF  +  L++P    E+V
Sbjct: 151 AMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGWPF--SAALSIPFILLELV 202


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 377 EEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQLHVRPQEPNGTYQSLDG 541
           ++Q+ S+   +PQ       Q    P Q  Q + + RQLH   Q+P  T  S +G
Sbjct: 167 QQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNG 221


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 592 PSTTLASLVILACTFPVTIQALICPVW 512
           PST LAS  I +   P +I+  + P W
Sbjct: 294 PSTILASQTIFSEEHPSSIEPFVAPYW 320


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 411 LKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTG 521
           +KE  EL   G      G SNEDD+  + C ++   G
Sbjct: 11  MKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG 47


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/47 (21%), Positives = 20/47 (42%)
 Frame = +3

Query: 732 QGLDNTVLVLXNAERADAGLYQCSPAGGTPADVTLRVKGVYDALWPF 872
           + + NT+ +  N +  D        +    +D T  +K  ++  WPF
Sbjct: 28  ESVSNTISLSENGQNQDLETVTTKESNVGDSDTTENIKSPFNGQWPF 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,912
Number of Sequences: 5004
Number of extensions: 57959
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)